Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A4W84_RS06470 Genome accession   NZ_CP017568
Coordinates   1279605..1280219 (+) Length   204 a.a.
NCBI ID   WP_251908045.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274605..1285219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS06450 (A4W84_06350) - 1275238..1277028 (-) 1791 WP_016265354.1 ABC transporter ATP-binding protein -
  A4W84_RS06455 (A4W84_06355) - 1277030..1278775 (-) 1746 WP_251908044.1 ABC transporter ATP-binding protein -
  A4W84_RS06460 (A4W84_06360) - 1278917..1279147 (-) 231 WP_011374970.1 YneF family protein -
  A4W84_RS06465 (A4W84_06365) - 1279228..1279470 (-) 243 WP_011374971.1 DUF896 domain-containing protein -
  A4W84_RS06470 (A4W84_06370) dinR/lexA 1279605..1280219 (+) 615 WP_251908045.1 transcriptional repressor LexA Regulator
  A4W84_RS06475 (A4W84_06375) - 1280353..1280871 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  A4W84_RS06480 (A4W84_06380) recJ 1280895..1283207 (-) 2313 WP_251908046.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A4W84_RS06485 (A4W84_06385) galE 1283352..1284344 (+) 993 WP_011374975.1 UDP-glucose 4-epimerase GalE -
  A4W84_RS06490 (A4W84_06390) - 1284430..1284795 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  A4W84_RS06495 (A4W84_06395) - 1284812..1285138 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22557.92 Da        Isoelectric Point: 4.9705

>NTDB_id=169293 A4W84_RS06470 WP_251908045.1 1279605..1280219(+) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.417]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTSAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=169293 A4W84_RS06470 WP_251908045.1 1279605..1280219(+) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.417]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAGCCACGGGCGATCGAGTTAACGTCCGCTGGCCTAACGGCAATTGGGGCGACACCC
CAGAAAATACCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAATGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGAGATCGCATGTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(84-197)

LexA DNA binding domain (LexA_DNA_bind)

(3-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593

Multiple sequence alignment