Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A4W83_RS00020 Genome accession   NZ_CP017566
Coordinates   3350..4477 (+) Length   375 a.a.
NCBI ID   WP_011373722.1    Uniprot ID   Q38ZS1
Organism   Latilactobacillus sakei strain TMW 1.114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W83_RS00005 (A4W83_00005) dnaA 210..1556 (+) 1347 WP_011373719.1 chromosomal replication initiator protein DnaA -
  A4W83_RS00010 (A4W83_00010) dnaN 1734..2873 (+) 1140 WP_011373720.1 DNA polymerase III subunit beta -
  A4W83_RS00015 (A4W83_00015) yaaA 3116..3343 (+) 228 WP_016264312.1 S4 domain-containing protein YaaA -
  A4W83_RS00020 (A4W83_00020) recF 3350..4477 (+) 1128 WP_011373722.1 DNA replication/repair protein RecF Machinery gene
  A4W83_RS00025 (A4W83_00025) gyrB 4499..6490 (+) 1992 WP_049762101.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  A4W83_RS00030 (A4W83_00030) gyrA 6538..9111 (+) 2574 WP_056946786.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43246.17 Da        Isoelectric Point: 6.5993

>NTDB_id=169150 A4W83_RS00020 WP_011373722.1 3350..4477(+) (recF) [Latilactobacillus sakei strain TMW 1.114]
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQWHEDFAKITGLVQRSAGK
TPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQR
NQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE
LYQQFQTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAEIDLMKAQTGEYPILLLDDVL
SELDDLRQTHLLKTFQNKVQTFLTTTSLENVKKEIIATPRVFTVTNGVVIEEQAE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=169150 A4W83_RS00020 WP_011373722.1 3350..4477(+) (recF) [Latilactobacillus sakei strain TMW 1.114]
ATGTATCTAAGCGAACTACAACTGAATCATTATCGTAATTATGAGTCAGTTGATGTGCACTTTTCACCGGATACGAACGT
CTTGATTGGTGAAAATGCGCAGGGGAAAACGAACTTACTAGAAGCAATCTACGTTTTAGCCTTGGCCCGCTCACATCGCA
CGAATACCGATCGCGAATTAATTCAATGGCATGAAGATTTCGCTAAAATTACCGGCTTGGTCCAACGTTCTGCAGGGAAA
ACCCCGTTAGAACTCGTTTTAAGCCAAAAAGGTAAAAAGGCGAAGGTCAATCATTTAGAACAGGCCAAGTTATCACAATA
TATTGGTCAGCTAAACGTCGTGTTATTTGCGCCGGAGGATTTAAACATCGTTAAGGGTTCGCCCGCTGTGAGACGTCATT
TCATTGATATGGAATTCGGGCAGATGAGTAGCAAGTATCTCTATAATATTTCGCAATACAAATCAATTCTGAAACAACGT
AATCAATATCTTAAGCAACTCCAACGGCGCCAAGCCAAGGATCTTGTTTATTTAGGTGTTTTATCGGATCAATTAGCGGC
TTACGGGGCGGAAGTGACCGTGGCCCGGCGCCAGTTTCTCCAACAAATGGAAAAATGGGCCCAAAAATTGCATCAGGAGA
TTACGAAGGATCGGGAAGTCTTGACGTTTAAATATCAAAGTCAGATTCCAGAAGAACAATTGGATCAAAGTGTCGAAGAA
CTCTATCAACAATTTCAAACCTTGTATGAGAAACAACAAATCCGTGAGGTTGAACAAGGCACGACGTTGATTGGTCCCCA
CCGCGATGATGTTCAATTTTTAGTCAACGATAAGGATGTGCAGGCCTTTGGTTCCCAAGGGCAACAACGGACAACCGCGT
TGAGTGTCAAATTGGCCGAAATTGACTTGATGAAGGCCCAAACCGGGGAATACCCGATTTTATTACTGGACGATGTGTTG
TCGGAATTAGACGATTTACGCCAAACACATTTGTTGAAGACGTTCCAAAACAAAGTCCAAACATTCCTCACGACAACCAG
TTTAGAGAATGTTAAAAAAGAAATTATTGCGACACCGCGCGTGTTTACAGTCACCAACGGGGTCGTCATAGAAGAACAAG
CAGAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

56.183

99.2

0.557
  recF Streptococcus pneumoniae R6

48.509

98.4

0.477

Multiple sequence alignment