Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AWM75_RS04625 Genome accession   NZ_CP014163
Coordinates   1021784..1022368 (-) Length   194 a.a.
NCBI ID   WP_067978845.1    Uniprot ID   -
Organism   Aerococcus urinaehominis strain CCUG42038B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1016784..1027368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM75_RS04620 (AWM75_04620) rpsR 1021518..1021754 (-) 237 WP_067978843.1 30S ribosomal protein S18 -
  AWM75_RS04625 (AWM75_04625) ssb 1021784..1022368 (-) 585 WP_067978845.1 single-stranded DNA-binding protein Machinery gene
  AWM75_RS04630 (AWM75_04630) rpsF 1022409..1022711 (-) 303 WP_067978848.1 30S ribosomal protein S6 -
  AWM75_RS04635 (AWM75_04635) gyrA 1022832..1025420 (-) 2589 WP_067978850.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21852.61 Da        Isoelectric Point: 4.4096

>NTDB_id=169045 AWM75_RS04625 WP_067978845.1 1021784..1022368(-) (ssb) [Aerococcus urinaehominis strain CCUG42038B]
MINNVVLVGRLTKDVELRYTQSGIAVASFTVAVERRFKNQQGERETDFILCVMWRKSAENFAKFTRKGSLVGIEGSIQTR
NYENNQGQRVYVTEVLAENFSLLEPKSVTESRPSSGDNYQNNFNDNQYFGGNQQQGNNFQQQNNDPFASLSNQSSSSQNG
SSHNYQPDNEPVNPYAGNNDGNQEIDITDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=169045 AWM75_RS04625 WP_067978845.1 1021784..1022368(-) (ssb) [Aerococcus urinaehominis strain CCUG42038B]
ATGATTAATAATGTTGTATTAGTGGGTCGCCTAACTAAAGATGTTGAACTACGTTATACGCAAAGCGGAATCGCTGTTGC
ATCCTTCACTGTTGCTGTTGAACGCCGGTTTAAAAACCAACAAGGCGAACGAGAAACTGATTTTATCTTATGTGTGATGT
GGCGAAAAAGCGCTGAAAATTTTGCTAAATTTACACGTAAAGGTTCCCTAGTAGGGATTGAAGGTTCTATCCAGACACGG
AACTACGAAAATAACCAAGGACAAAGAGTATATGTTACTGAAGTGCTTGCGGAAAACTTTTCATTACTAGAACCCAAATC
AGTTACTGAAAGTCGTCCTTCAAGCGGTGATAACTATCAAAATAACTTTAATGATAATCAGTATTTTGGTGGTAACCAGC
AGCAAGGAAATAACTTCCAACAACAAAATAACGATCCCTTTGCCTCACTAAGTAATCAGTCTTCCTCTTCTCAAAACGGA
AGTTCTCATAATTATCAACCTGATAATGAGCCAGTTAATCCTTATGCGGGAAATAACGATGGCAATCAGGAAATTGATAT
CACAGATGATGATCTTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.67

100

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.242

100

0.536

Multiple sequence alignment