Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PcP3B5_RS09570 Genome accession   NZ_CP014158
Coordinates   2112631..2113266 (+) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas citronellolis strain P3B5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2107631..2118266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS09555 (PcP3B5_19450) - 2107778..2109028 (+) 1251 WP_043267283.1 lipoprotein-releasing ABC transporter permease subunit -
  PcP3B5_RS09560 (PcP3B5_19460) - 2109684..2110214 (-) 531 WP_061561111.1 DUF2062 domain-containing protein -
  PcP3B5_RS09565 (PcP3B5_19470) comA 2110351..2112558 (+) 2208 WP_203228559.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PcP3B5_RS09570 (PcP3B5_19480) exbB 2112631..2113266 (+) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PcP3B5_RS09575 (PcP3B5_19490) - 2113263..2113709 (+) 447 WP_009621400.1 ExbD/TolR family protein -
  PcP3B5_RS09580 (PcP3B5_19500) lpxK 2113709..2114707 (+) 999 WP_061561113.1 tetraacyldisaccharide 4'-kinase -
  PcP3B5_RS09585 (PcP3B5_19510) - 2114748..2114933 (+) 186 WP_009621404.1 Trm112 family protein -
  PcP3B5_RS09590 (PcP3B5_19520) kdsB 2114947..2115711 (+) 765 WP_009621406.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PcP3B5_RS09595 (PcP3B5_19530) - 2115711..2116175 (+) 465 WP_061561114.1 low molecular weight protein-tyrosine-phosphatase -
  PcP3B5_RS09600 (PcP3B5_19540) murB 2116172..2117191 (+) 1020 WP_061561115.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=168927 PcP3B5_RS09570 WP_009621398.1 2112631..2113266(+) (exbB) [Pseudomonas citronellolis strain P3B5]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=168927 PcP3B5_RS09570 WP_009621398.1 2112631..2113266(+) (exbB) [Pseudomonas citronellolis strain P3B5]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAACTCAAGGCGTCTTCCCCGTTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment