Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   AWB63_RS08200 Genome accession   NZ_CP014144
Coordinates   1798759..1799796 (+) Length   345 a.a.
NCBI ID   WP_038676646.1    Uniprot ID   A0A0A1DZ51
Organism   Streptococcus salivarius strain JF     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1793759..1804796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS10895 - 1795577..1795702 (+) 126 WP_002884447.1 hypothetical protein -
  AWB63_RS08175 (AWB63_08175) - 1795720..1796328 (+) 609 WP_002884297.1 DUF4230 domain-containing protein -
  AWB63_RS10740 (AWB63_08180) - 1796422..1796886 (+) 465 WP_172855709.1 hypothetical protein -
  AWB63_RS10745 - 1796904..1797071 (+) 168 WP_002884708.1 hypothetical protein -
  AWB63_RS08185 (AWB63_08185) - 1797251..1797550 (-) 300 WP_002884229.1 hypothetical protein -
  AWB63_RS08190 (AWB63_08190) - 1797547..1797966 (-) 420 WP_002891660.1 HIT family protein -
  AWB63_RS08195 (AWB63_08195) pptA 1798031..1798762 (+) 732 WP_038676648.1 ABC transporter ATP-binding protein Regulator
  AWB63_RS08200 (AWB63_08200) pptB 1798759..1799796 (+) 1038 WP_038676646.1 ABC transporter permease Regulator
  AWB63_RS08205 (AWB63_08205) ccrZ 1799854..1800645 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  AWB63_RS08210 (AWB63_08210) trmB 1800655..1801296 (+) 642 WP_038676644.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AWB63_RS08220 (AWB63_08220) tnpA 1801620..1802093 (+) 474 Protein_1615 IS200/IS605 family transposase -
  AWB63_RS08225 (AWB63_08225) - 1802258..1803439 (-) 1182 WP_004183260.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 39979.44 Da        Isoelectric Point: 10.5540

>NTDB_id=168755 AWB63_RS08200 WP_038676646.1 1798759..1799796(+) (pptB) [Streptococcus salivarius strain JF]
MIAELFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLMLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLGHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQS
GLNWAEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRSYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVLFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAVCLFDLKF
SLILVGMMLVLSLVYLPSKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=168755 AWB63_RS08200 WP_038676646.1 1798759..1799796(+) (pptB) [Streptococcus salivarius strain JF]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
TCACTTTATCTTGGTTCTCCTCTTTCTTTTAGGTTTCGTCTTGGTGCAGTATAGCCAATTGCTGAAACATTTTCCCAAGA
ATCCATGGGCAATCATTCTTGGCTTGCTTATGCTTTGTCTGTTATTGCCTTTTTGGGGGAATATTGCGACTTATTTAGAA
CCTGCGGACAAGCACTACCTCTTGGTGAAGGAAGAAGAGGTGCTAGGCCATGTTAAGAAGGCAACAGGGCGTGCTTTTAG
ATTTTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCCCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATTCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTTATTTTCCAGAAAAAGGCCCAACCTTTTTATAAGCAGTCT
GGCCTGAATTGGGCTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTTTTTACCAA
TGTTAAGGGAATTACGTCGAGTGTTAAACGCCGTTCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTATCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTA
ACACTTCTGGTTCTCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAATCTTATGCCAGTTGGAAAAGACATGCAGGTAA
GCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCATCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A1DZ51

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

94.767

99.71

0.945

  pptB Streptococcus thermophilus LMD-9

91.279

99.71

0.91


Multiple sequence alignment