Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL521_RS10170 Genome accession   NZ_CP014132
Coordinates   2070724..2071119 (-) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2065724..2076119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL521_RS10145 (AL521_10145) thiE 2066465..2067103 (-) 639 WP_002458704.1 thiamine phosphate synthase -
  AL521_RS10150 (AL521_10150) thiM 2067109..2067897 (-) 789 WP_002486939.1 hydroxyethylthiazole kinase -
  AL521_RS10155 (AL521_10155) thiD 2067890..2068711 (-) 822 WP_002458705.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AL521_RS10160 (AL521_10160) tenA 2068704..2069393 (-) 690 WP_002491179.1 thiaminase II -
  AL521_RS10165 (AL521_10165) - 2069677..2070336 (-) 660 WP_002447776.1 transglycosylase family protein -
  AL521_RS10170 (AL521_10170) ssb 2070724..2071119 (-) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  AL521_RS10175 (AL521_10175) - 2071310..2071750 (+) 441 WP_002458706.1 YwpF-like family protein -
  AL521_RS10180 (AL521_10180) fabZ 2072068..2072505 (-) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AL521_RS10185 (AL521_10185) murA 2072539..2073804 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AL521_RS10190 (AL521_10190) - 2073914..2074147 (-) 234 WP_002456242.1 DUF1146 family protein -
  AL521_RS10195 (AL521_10195) - 2074296..2074700 (-) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=168545 AL521_RS10170 WP_002447777.1 2070724..2071119(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_161]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=168545 AL521_RS10170 WP_002447777.1 2070724..2071119(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_161]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCCAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment