Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AL521_RS05160 Genome accession   NZ_CP014132
Coordinates   1041966..1042541 (+) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_161     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036966..1047541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL521_RS05130 (AL521_05130) - 1037863..1039368 (+) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  AL521_RS05135 (AL521_05135) - 1039471..1040073 (-) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AL521_RS05140 (AL521_05140) - 1040079..1040264 (-) 186 WP_001829339.1 DUF2187 family protein -
  AL521_RS05145 (AL521_05145) - 1040469..1041455 (+) 987 WP_001829269.1 lipoate--protein ligase -
  AL521_RS05150 (AL521_05150) - 1041533..1041751 (-) 219 WP_001829292.1 IDEAL domain-containing protein -
  AL521_RS05160 (AL521_05160) comK/comK1 1041966..1042541 (+) 576 WP_001829272.1 competence protein ComK Regulator
  AL521_RS12355 - 1043063..1044118 (-) 1056 WP_049319066.1 tyrosine-type recombinase/integrase -
  AL521_RS05180 (AL521_05180) - 1044192..1044857 (-) 666 WP_049319067.1 Ltp family lipoprotein -
  AL521_RS05185 (AL521_05185) - 1044870..1045244 (-) 375 WP_049319069.1 hypothetical protein -
  AL521_RS05190 (AL521_05190) - 1045400..1045735 (-) 336 WP_002446811.1 helix-turn-helix domain-containing protein -
  AL521_RS05195 (AL521_05195) - 1045896..1046087 (+) 192 WP_002501702.1 helix-turn-helix transcriptional regulator -
  AL521_RS05200 (AL521_05200) - 1046141..1046449 (+) 309 WP_002501703.1 DUF771 domain-containing protein -
  AL521_RS05205 (AL521_05205) - 1046520..1047092 (-) 573 WP_141750953.1 hypothetical protein -
  AL521_RS05210 (AL521_05210) - 1047164..1047358 (+) 195 WP_049319073.1 DUF1270 family protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=168526 AL521_RS05160 WP_001829272.1 1041966..1042541(+) (comK/comK1) [Staphylococcus epidermidis strain FDAARGOS_161]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=168526 AL521_RS05160 WP_001829272.1 1041966..1042541(+) (comK/comK1) [Staphylococcus epidermidis strain FDAARGOS_161]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment