Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | AL514_RS09800 | Genome accession | NZ_CP014119 |
| Coordinates | 1910023..1910895 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain FDAARGOS_153 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1877870..1920076 | 1910023..1910895 | within | 0 |
Gene organization within MGE regions
Location: 1877870..1920076
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL514_RS09655 (AL514_09715) | rsgA | 1878509..1879384 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| AL514_RS09660 (AL514_09720) | rpe | 1879385..1880029 (+) | 645 | WP_002469381.1 | ribulose-phosphate 3-epimerase | - |
| AL514_RS09665 (AL514_09725) | - | 1880034..1880669 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| AL514_RS09670 (AL514_09730) | rpmB | 1880752..1880940 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| AL514_RS09675 (AL514_09735) | - | 1881298..1881672 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| AL514_RS09680 (AL514_09740) | fakA | 1881687..1883345 (+) | 1659 | WP_002456580.1 | fatty acid kinase catalytic subunit FakA | - |
| AL514_RS09685 (AL514_09745) | recG | 1883549..1885597 (+) | 2049 | WP_002456579.1 | ATP-dependent DNA helicase RecG | - |
| AL514_RS09690 (AL514_09750) | fapR | 1885756..1886316 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| AL514_RS09695 (AL514_09755) | plsX | 1886318..1887295 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| AL514_RS09700 (AL514_09760) | fabD | 1887297..1888223 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| AL514_RS09705 (AL514_09765) | fabG | 1888216..1888950 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| AL514_RS09710 (AL514_09770) | - | 1889178..1889411 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| AL514_RS09715 (AL514_09775) | rnc | 1889526..1890263 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| AL514_RS09720 (AL514_09780) | smc | 1890390..1893959 (+) | 3570 | WP_002456574.1 | chromosome segregation protein SMC | - |
| AL514_RS09725 (AL514_09785) | ftsY | 1893956..1895182 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| AL514_RS09730 (AL514_09790) | - | 1895184..1895516 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| AL514_RS09735 (AL514_09795) | ffh | 1895547..1896914 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| AL514_RS09740 (AL514_09800) | rpsP | 1897222..1897497 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| AL514_RS09745 (AL514_09805) | rimM | 1897624..1898127 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| AL514_RS09750 (AL514_09810) | trmD | 1898127..1898864 (+) | 738 | WP_104832474.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AL514_RS09755 (AL514_09815) | rplS | 1898970..1899320 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| AL514_RS09760 (AL514_09820) | - | 1899850..1902453 (-) | 2604 | WP_002456572.1 | YfhO family protein | - |
| AL514_RS09765 (AL514_09825) | - | 1902446..1905046 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| AL514_RS09775 (AL514_09835) | ylqF | 1905375..1906238 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| AL514_RS09780 (AL514_09840) | - | 1906243..1907013 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| AL514_RS09785 (AL514_09845) | sucC | 1907121..1908287 (+) | 1167 | WP_002456569.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AL514_RS09790 (AL514_09850) | sucD | 1908309..1909217 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| AL514_RS09800 (AL514_09860) | dprA | 1910023..1910895 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| AL514_RS09805 (AL514_09865) | topA | 1911078..1913147 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| AL514_RS09810 (AL514_09870) | trmFO | 1913172..1914479 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| AL514_RS09815 (AL514_09875) | xerC | 1914734..1915594 (+) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| AL514_RS09820 (AL514_09880) | hslV | 1915598..1916140 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| AL514_RS09825 (AL514_09885) | hslU | 1916209..1917612 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| AL514_RS09830 (AL514_09890) | codY | 1917636..1918409 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| AL514_RS09835 (AL514_09895) | rpsB | 1918768..1919556 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=168454 AL514_RS09800 WP_001829468.1 1910023..1910895(+) (dprA) [Staphylococcus epidermidis strain FDAARGOS_153]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=168454 AL514_RS09800 WP_001829468.1 1910023..1910895(+) (dprA) [Staphylococcus epidermidis strain FDAARGOS_153]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |