Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL514_RS01380 Genome accession   NZ_CP014119
Coordinates   195064..195459 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain FDAARGOS_153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190064..200459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL514_RS01355 (AL514_01415) thiE 190805..191443 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  AL514_RS01360 (AL514_01420) thiM 191449..192237 (-) 789 WP_002469583.1 hydroxyethylthiazole kinase -
  AL514_RS01365 (AL514_01425) thiD 192230..193051 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AL514_RS01370 (AL514_01430) tenA 193044..193733 (-) 690 WP_001829894.1 thiaminase II -
  AL514_RS01375 (AL514_01435) - 194017..194676 (-) 660 WP_001829904.1 transglycosylase family protein -
  AL514_RS01380 (AL514_01440) ssb 195064..195459 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  AL514_RS01385 (AL514_01445) - 195650..196090 (+) 441 WP_001829935.1 YwpF-like family protein -
  AL514_RS01390 (AL514_01450) fabZ 196408..196845 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AL514_RS01395 (AL514_01455) murA 196879..198144 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AL514_RS01400 (AL514_01460) - 198254..198487 (-) 234 WP_002456242.1 DUF1146 family protein -
  AL514_RS01405 (AL514_01465) - 198636..199040 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=168436 AL514_RS01380 WP_002457121.1 195064..195459(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_153]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=168436 AL514_RS01380 WP_002457121.1 195064..195459(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_153]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment