Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AL552_RS23550 Genome accession   NZ_CP014095
Coordinates   1398816..1399997 (-) Length   393 a.a.
NCBI ID   WP_074190597.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393816..1404997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS23535 (AL552_06425) - 1395049..1395596 (+) 548 Protein_1235 GNAT family N-acetyltransferase -
  AL552_RS23540 (AL552_06430) - 1395683..1396300 (-) 618 WP_104970629.1 HAD family phosphatase -
  AL552_RS23545 (AL552_06435) cqsS 1396668..1398713 (+) 2046 WP_104970630.1 response regulator Regulator
  AL552_RS23550 (AL552_06440) cqsA 1398816..1399997 (-) 1182 WP_074190597.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL552_RS23555 (AL552_06445) ylqF 1400336..1401280 (-) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  AL552_RS23560 (AL552_06450) - 1401959..1403113 (+) 1155 WP_047008284.1 EAL domain-containing protein -
  AL552_RS25485 - 1403118..1403267 (+) 150 WP_048624969.1 hypothetical protein -
  AL552_RS23565 (AL552_06455) - 1403274..1404635 (+) 1362 WP_104970631.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43693.98 Da        Isoelectric Point: 6.2260

>NTDB_id=168353 AL552_RS23550 WP_074190597.1 1398816..1399997(-) (cqsA) [Vibrio diabolicus strain FDAARGOS_96]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPTCNAIVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=168353 AL552_RS23550 WP_074190597.1 1398816..1399997(-) (cqsA) [Vibrio diabolicus strain FDAARGOS_96]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCAACGTGTAATGCCATTGTTATGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAATCAAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCAGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTGCGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCGGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGGGCAGAAAAGCTGGCTAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTCTAGAAGAAAGGAATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.881

98.473

0.57

Multiple sequence alignment