Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   AL552_RS23545 Genome accession   NZ_CP014095
Coordinates   1396668..1398713 (+) Length   681 a.a.
NCBI ID   WP_104970630.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391668..1403713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS23525 (AL552_06415) dcuC 1391930..1393297 (-) 1368 WP_104970627.1 anaerobic C4-dicarboxylate transporter DcuC -
  AL552_RS23530 (AL552_06420) - 1393653..1394777 (-) 1125 WP_104970628.1 fatty acid desaturase -
  AL552_RS23535 (AL552_06425) - 1395049..1395596 (+) 548 Protein_1235 GNAT family N-acetyltransferase -
  AL552_RS23540 (AL552_06430) - 1395683..1396300 (-) 618 WP_104970629.1 HAD family phosphatase -
  AL552_RS23545 (AL552_06435) cqsS 1396668..1398713 (+) 2046 WP_104970630.1 response regulator Regulator
  AL552_RS23550 (AL552_06440) cqsA 1398816..1399997 (-) 1182 WP_074190597.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL552_RS23555 (AL552_06445) ylqF 1400336..1401280 (-) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  AL552_RS23560 (AL552_06450) - 1401959..1403113 (+) 1155 WP_047008284.1 EAL domain-containing protein -
  AL552_RS25485 - 1403118..1403267 (+) 150 WP_048624969.1 hypothetical protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78125.56 Da        Isoelectric Point: 5.4982

>NTDB_id=168352 AL552_RS23545 WP_104970630.1 1396668..1398713(+) (cqsS) [Vibrio diabolicus strain FDAARGOS_96]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWDFVFPQAYENLPFRLFCSLLFFGIIFRNRLSSTWRKYIHIYYQVTIT
ICLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPSKKEAEKDQYLMSGEDVTLLREVSEDAMN
IIQSGNETIDLLLTSIDENRVSRSSFQKHSAHSVVEKAIESFSYKRATDRFAISLDARSEFDFLGSDTLLKYVMYNLFKN
AFHHRTSEDFHIHVSMTSTEHSNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPPITSDIVTEIKNDLTKLKTILTVTNQDILVSKVTDISRFMGFESTILDVNQVLKKKEYEFEFDLIFIDLE
SLDARANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWVETQAWLLNTKPTIDRLLYDSSYVSTPTASVALDTS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQENVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=168352 AL552_RS23545 WP_104970630.1 1396668..1398713(+) (cqsS) [Vibrio diabolicus strain FDAARGOS_96]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCCAACCTGACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTTTGGGATTTTGTTTTCCCACAGGCTTATGAAAACTTGCCGTTCAGATTGTTTTGTTCACTATTGT
TCTTTGGCATCATTTTTAGAAATCGCCTGTCGTCAACGTGGCGAAAATATATCCATATTTACTACCAAGTGACGATAACG
ATTTGCTTACCGTTTTTCTTTTTCTATATGTTACTGATGAATGACTGGTCCAATGTTTGGGTCATGTCCTTTATGTCCGC
GATTTTCTTGCACATTCTATTGGTTCATGTCACAAGAGTTATGTTCGCTCAAACTTTTGCCGGAATAGGTTTAGCGACGT
TCTTTGCTTGGGTGGCGAAAGGGTTTCATCTCGATTTAACAATGGACTGGACGCATGTGCCAATCTTTCTCTTTATTTAT
GTATTTGGCAATTTATTCTATTTTCGGAACCAAGTGGAGCACGAAGCGAAGGTGTCGTTGGCCAAGTCATTCGGGGCCGG
AATTGCGCATGAAATGCGTAACCCTTTAAGTGGCCTTTGCACGTCAATCGATGTTATCCAATCAGTCTTACCCAGTAAAA
AAGAAGCCGAGAAAGACCAATATCTGATGAGCGGAGAGGATGTCACCCTGCTGCGCGAAGTTAGTGAGGATGCGATGAAC
ATCATCCAGTCGGGCAACGAGACGATAGATTTACTTTTGACATCGATAGACGAAAACCGTGTCTCGCGATCCAGTTTCCA
AAAGCATTCTGCTCACTCAGTGGTTGAAAAAGCGATTGAAAGCTTTAGTTATAAGCGTGCGACGGATCGCTTTGCTATAT
CCCTAGATGCGAGAAGTGAGTTTGATTTTCTTGGTAGCGATACCTTACTCAAATACGTTATGTATAACCTTTTCAAGAAC
GCCTTCCATCATCGCACATCTGAAGATTTCCACATACATGTCTCCATGACGAGTACGGAGCACTCAAACCAAATCGTTGT
AACCGATAATGGTGCAGGCATTGCTCCTGATGTCCTACGTAATATATTTCAGGACTTTTACACAACTGGTAAGTCAGGCA
GCTATGGTTTGGGTTTGCCATTTTGTAAAAAAGTGATGCGTTCTTTTGGAGGTAACATTGAATGCCAGTCTCAGCTAGGT
GAGTGGTCTCAGTTCACGTTAACTTTCCCGCCGATCACATCTGATATCGTGACTGAAATTAAAAACGATTTGACCAAACT
CAAAACCATCCTAACGGTGACTAATCAAGATATTCTTGTGTCGAAAGTGACGGACATTAGCCGTTTTATGGGTTTTGAAT
CAACGATCTTAGATGTTAATCAAGTGCTCAAAAAGAAAGAGTATGAGTTCGAATTCGACCTGATTTTTATCGATCTTGAG
AGCTTGGATGCAAGAGCAAACCAATTAGATAGATTAGAATCTCTTCTGTCTTTCACGGAAGCTCGTATCGTTTATCTTTT
TGAGCATCACCCGACACAGAGAGCACGCAAAGCGGCATATGAGCCTATTTGGGTCGAGACTCAAGCCTGGTTATTGAATA
CTAAGCCAACCATTGACCGTCTCTTGTATGATTCAAGCTATGTGTCGACACCAACGGCCTCAGTGGCTTTGGATACGTCA
AATAAACGGACAATTATGGTCGTGGATGATAACGAATCTTTGCGAAAATTTACCGCGATGTTACTCGAAAAGCAGGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAAGCACTGGATACATTAGAGCAAGAGAACGTTGACCTCATTCTTATGGATA
TCGAGATGCCCATCATGGATGGTGTAGAAGCTTCAAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCGCATACTGGGGATAGCTCACCTGTTACGCTGGACAAAATAGGCTCTTCTGGCATGTCTGACTTTATCGTAAAACC
AGCGGATAAAAATCGCTTATTCGACAAAATCGCAAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.343

100

0.496

Multiple sequence alignment