Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BHE76_RS11285 Genome accession   NZ_CP017353
Coordinates   2421706..2422380 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain FA-HZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2416706..2427380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHE76_RS11255 (BHE76_11250) - 2416881..2418215 (+) 1335 WP_023114986.1 aspartate aminotransferase family protein -
  BHE76_RS11260 (BHE76_11255) - 2418281..2418643 (+) 363 WP_003096551.1 cupin domain-containing protein -
  BHE76_RS11265 (BHE76_11260) rpmG 2418778..2418933 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  BHE76_RS11270 (BHE76_11265) rpmB 2418945..2419181 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  BHE76_RS11275 (BHE76_11270) - 2419536..2421115 (+) 1580 Protein_2263 ABC transporter substrate-binding protein -
  BHE76_RS11280 (BHE76_11275) - 2421141..2421689 (+) 549 WP_003098290.1 hypothetical protein -
  BHE76_RS11285 (BHE76_11280) radC 2421706..2422380 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  BHE76_RS11290 (BHE76_11285) coaBC 2422520..2423728 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BHE76_RS11295 (BHE76_11290) dut 2423736..2424191 (+) 456 WP_003098293.1 dUTP diphosphatase -
  BHE76_RS11300 (BHE76_11295) - 2424228..2426825 (+) 2598 WP_023114987.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=168347 BHE76_RS11285 WP_003096559.1 2421706..2422380(-) (radC) [Pseudomonas aeruginosa strain FA-HZ1]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=168347 BHE76_RS11285 WP_003096559.1 2421706..2422380(-) (radC) [Pseudomonas aeruginosa strain FA-HZ1]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGTACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397