Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AL552_RS13065 Genome accession   NZ_CP014094
Coordinates   2466957..2467571 (+) Length   204 a.a.
NCBI ID   WP_104969778.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461957..2472571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS13045 (AL552_21200) - 2462240..2463157 (-) 918 WP_005396713.1 ABC transporter ATP-binding protein -
  AL552_RS13050 (AL552_21205) - 2463410..2465080 (-) 1671 WP_104969777.1 SulP family inorganic anion transporter -
  AL552_RS13055 (AL552_21210) can 2465363..2466031 (+) 669 WP_005379996.1 carbonate dehydratase -
  AL552_RS13060 (AL552_21215) hpt 2466108..2466638 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  AL552_RS13065 (AL552_21220) opaR 2466957..2467571 (+) 615 WP_104969778.1 transcriptional regulator OpaR Regulator
  AL552_RS13070 (AL552_21225) lpdA 2467718..2469145 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  AL552_RS13075 (AL552_21230) aceF 2469414..2471309 (-) 1896 WP_104969779.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23638.92 Da        Isoelectric Point: 6.2925

>NTDB_id=168325 AL552_RS13065 WP_104969778.1 2466957..2467571(+) (opaR) [Vibrio diabolicus strain FDAARGOS_96]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKYLVSSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=168325 AL552_RS13065 WP_104969778.1 2466957..2467571(+) (opaR) [Vibrio diabolicus strain FDAARGOS_96]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCGATCAAACGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTGTTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACCGTTT
TTAACTACTTCCCGACTCGTGAAGACTTAGTGGATGAAGTACTCAACCACGTCGTACGTCAGTTCTCGAACTTCCTATCG
GATAACATTGACTTAGACTTACACGCGCGTGAAAACATCGCCAATATTACTAATGCGATGATTGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTTTGGTTCGAGTGGAGCGCTTCAACACGTGATGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTATGTGACCAGCACGATTCAGAA
CACTTGGCAAACTTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGTGCAAAAAGTGAAGCGGAACTTAA
GTACCTTGTTAGTTCATACTTAGACATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment