Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSBS38_RS16720 Genome accession   NZ_CP017314
Coordinates   3140238..3140873 (-) Length   211 a.a.
NCBI ID   WP_069964308.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135238..3145873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS16700 (BSBS38_03357) yvzF 3136295..3136480 (-) 186 WP_003221676.1 YvzF family protein -
  BSBS38_RS16705 (BSBS38_03358) gerAA 3136598..3138046 (+) 1449 WP_069964306.1 spore germination receptor protein GerAA -
  BSBS38_RS16710 (BSBS38_03359) gerAB 3138015..3139112 (+) 1098 WP_041333097.1 spore germination receptor protein GerAB -
  BSBS38_RS16715 (BSBS38_03360) gerAC 3139109..3140230 (+) 1122 WP_069964307.1 spore germination receptor protein GerAC -
  BSBS38_RS16720 (BSBS38_03361) vraR 3140238..3140873 (-) 636 WP_069964308.1 two-component system response regulator LiaR Regulator
  BSBS38_RS16725 (BSBS38_03362) liaS 3140851..3141933 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  BSBS38_RS16730 (BSBS38_03363) liaF 3141930..3142655 (-) 726 WP_069964309.1 LiaRS two-component regulatory system accessory protein LiaF -
  BSBS38_RS16735 (BSBS38_03364) liaG 3142689..3143561 (-) 873 WP_014480833.1 DUF4097 domain-containing protein -
  BSBS38_RS16740 (BSBS38_03365) liaH 3143662..3144339 (-) 678 WP_014480834.1 stress responsive protein LiaH -
  BSBS38_RS16745 (BSBS38_03366) liaI 3144366..3144746 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23210.88 Da        Isoelectric Point: 5.1764

>NTDB_id=168283 BSBS38_RS16720 WP_069964308.1 3140238..3140873(-) (vraR) [Bacillus subtilis strain BS38]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFL
IAEGKTNKEIGKELFITIKTIKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=168283 BSBS38_RS16720 WP_069964308.1 3140238..3140873(-) (vraR) [Bacillus subtilis strain BS38]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCAAGGAACTGTTTATTACGATTAAAACAATCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.905

99.526

0.517
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.389