Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   BSBS38_RS08485 Genome accession   NZ_CP017314
Coordinates   1606614..1607639 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain BS38     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601614..1612639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS08450 (BSBS38_01708) ylbE 1601914..1602153 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSBS38_RS08455 (BSBS38_01709) ylbF 1602269..1602718 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSBS38_RS08460 (BSBS38_01710) ylbG 1602773..1603045 (+) 273 WP_069964462.1 YlbG family protein -
  BSBS38_RS08465 (BSBS38_01711) rsmD 1603368..1603922 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSBS38_RS08470 (BSBS38_01712) coaD 1603927..1604412 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSBS38_RS08475 (BSBS38_01713) spoVV 1604423..1605649 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  BSBS38_RS08480 (BSBS38_01714) ylbK 1605830..1606612 (+) 783 WP_003232221.1 patatin family protein -
  BSBS38_RS08485 (BSBS38_01715) sepM 1606614..1607639 (+) 1026 WP_003245451.1 protease DdcP Regulator
  BSBS38_RS08490 (BSBS38_01716) tmcAL 1607656..1608903 (-) 1248 WP_014479717.1 nucleotidyltransferase -
  BSBS38_RS08495 (BSBS38_01717) - 1608900..1609085 (-) 186 WP_003232215.1 hypothetical protein -
  BSBS38_RS08500 (BSBS38_01718) ylbN 1609113..1609631 (+) 519 WP_014479718.1 YceD family protein -
  BSBS38_RS08505 (BSBS38_01719) rpmF 1609653..1609832 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  BSBS38_RS08510 (BSBS38_01720) gerR 1609978..1610559 (+) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  BSBS38_RS08515 (BSBS38_01721) ylbP 1610616..1611098 (-) 483 WP_014476736.1 N-acetyltransferase -
  BSBS38_RS08520 (BSBS38_01722) panEA 1611258..1612154 (+) 897 WP_014479721.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=168221 BSBS38_RS08485 WP_003245451.1 1606614..1607639(+) (sepM) [Bacillus subtilis strain BS38]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=168221 BSBS38_RS08485 WP_003245451.1 1606614..1607639(+) (sepM) [Bacillus subtilis strain BS38]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402