Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BSBS38_RS08455 Genome accession   NZ_CP017314
Coordinates   1602269..1602718 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain BS38     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597269..1607718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS08415 (BSBS38_01701) ctaE 1597286..1597909 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  BSBS38_RS08420 (BSBS38_01702) ctaF 1597912..1598244 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  BSBS38_RS08425 (BSBS38_01703) ctaG 1598272..1599165 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  BSBS38_RS08430 (BSBS38_01704) ylbA 1599197..1599559 (-) 363 WP_003232238.1 YugN family protein -
  BSBS38_RS08435 (BSBS38_01705) ylbB 1599699..1600145 (+) 447 WP_046160383.1 CBS domain-containing protein -
  BSBS38_RS08440 (BSBS38_01706) ylbC 1600229..1601269 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  BSBS38_RS08445 (BSBS38_01707) ylbD 1601500..1601898 (+) 399 WP_003232233.1 YlbD family protein -
  BSBS38_RS08450 (BSBS38_01708) ylbE 1601914..1602153 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSBS38_RS08455 (BSBS38_01709) ylbF 1602269..1602718 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSBS38_RS08460 (BSBS38_01710) ylbG 1602773..1603045 (+) 273 WP_069964462.1 YlbG family protein -
  BSBS38_RS08465 (BSBS38_01711) rsmD 1603368..1603922 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSBS38_RS08470 (BSBS38_01712) coaD 1603927..1604412 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSBS38_RS08475 (BSBS38_01713) spoVV 1604423..1605649 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  BSBS38_RS08480 (BSBS38_01714) ylbK 1605830..1606612 (+) 783 WP_003232221.1 patatin family protein -
  BSBS38_RS08485 (BSBS38_01715) sepM 1606614..1607639 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=168220 BSBS38_RS08455 WP_003221370.1 1602269..1602718(+) (ylbF) [Bacillus subtilis strain BS38]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=168220 BSBS38_RS08455 WP_003221370.1 1602269..1602718(+) (ylbF) [Bacillus subtilis strain BS38]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCTACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1