Detailed information NTG0168197

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AL532_RS04140
• Genome accession: NZ_CP014062
• Coordinates: 805131..805997 (+)
• Length: 288 a.a.
• NCBI ID: WP_104833507.1
• Uniprot ID: -
• Organism: Pseudomonas monteilii strain FDAARGOS_171
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 800131..810997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL532_RS04120 (AL532_04110)	-	801656..802984 (-)	1329	WP_104833505.1	phage integrase central domain-containing protein	-
AL532_RS04130 (AL532_04120)	-	803293..803703 (-)	411	WP_104833506.1	pilin	-
AL532_RS04135 (AL532_04125)	-	803920..805128 (+)	1209	WP_060500119.1	type II secretion system F family protein	-
AL532_RS04140 (AL532_04130)	pilD	805131..805997 (+)	867	WP_104833507.1	A24 family peptidase	Machinery gene
AL532_RS04145 (AL532_04135)	coaE	805997..806620 (+)	624	WP_016713386.1	dephospho-CoA kinase	-
AL532_RS04150 (AL532_04140)	yacG	806617..806817 (+)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
AL532_RS04155 (AL532_04145)	-	806941..807648 (-)	708	WP_060500122.1	energy-coupling factor ABC transporter permease	-
AL532_RS04160 (AL532_04150)	-	807735..808166 (+)	432	WP_060500126.1	hypothetical protein	-
AL532_RS04165 (AL532_04155)	-	808222..808851 (+)	630	WP_013970766.1	DUF1780 domain-containing protein	-
AL532_RS04170 (AL532_04160)	-	808984..809157 (+)	174	WP_013970765.1	DUF3094 family protein	-
AL532_RS04175 (AL532_04165)	-	809242..810537 (+)	1296	WP_060500123.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31982.19 Da
• Isoelectric Point: 7.5974

>NTDB_id=168197 AL532_RS04140 WP_104833507.1 805131..805997(+) (pilD) [Pseudomonas monteilii strain FDAARGOS_171]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERYDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSACKTRISPRYPVVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDMLVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=168197 AL532_RS04140 WP_104833507.1 805131..805997(+) (pilD) [Pseudomonas monteilii strain FDAARGOS_171]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGC
TGCCGGTTACGCAACACGAACGGTACGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGTTACCTGGCATTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGGTGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGCTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATATGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCAACCTGTATGCCCCGCTTACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGTATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGCTGGCCTGTGCCTGCTGCGTCTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.43	96.181	0.514
pilD	Acinetobacter baumannii D1279779	51.246	97.569	0.5
pilD	Acinetobacter nosocomialis M2	51.88	92.361	0.479
pilD	Vibrio campbellii strain DS40M4	48.561	96.528	0.469
pilD	Neisseria gonorrhoeae MS11	48.507	93.056	0.451