Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSBS38_RS05345 Genome accession   NZ_CP017314
Coordinates   1027346..1027993 (+) Length   215 a.a.
NCBI ID   WP_069837394.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022346..1032993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS05330 (BSBS38_01083) glpD 1022517..1024184 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  BSBS38_RS05335 (BSBS38_01084) pgcA 1024316..1026061 (+) 1746 WP_046160373.1 phosphoglucomutase -
  BSBS38_RS05340 (BSBS38_01085) yhcY 1026210..1027349 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  BSBS38_RS05345 (BSBS38_01086) vraR 1027346..1027993 (+) 648 WP_069837394.1 two-component system response regulator YhcZ Regulator
  BSBS38_RS05350 (BSBS38_01087) yhdA 1027990..1028514 (+) 525 WP_038829245.1 FMN-dependent NADPH-azoreductase -
  BSBS38_RS05355 (BSBS38_01088) yhdB 1028529..1028771 (-) 243 WP_003233373.1 YhdB family protein -
  BSBS38_RS05360 (BSBS38_01089) yhdC 1028972..1029295 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  BSBS38_RS05365 (BSBS38_01090) lytF 1029336..1030802 (-) 1467 WP_069964079.1 peptidoglycan endopeptidase LytF -
  BSBS38_RS05370 (BSBS38_01091) nsrR 1030954..1031394 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24148.79 Da        Isoelectric Point: 6.5025

>NTDB_id=168190 BSBS38_RS05345 WP_069837394.1 1027346..1027993(+) (vraR) [Bacillus subtilis strain BS38]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPQTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=168190 BSBS38_RS05345 WP_069837394.1 1027346..1027993(+) (vraR) [Bacillus subtilis strain BS38]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGCAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

97.209

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409