Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL494_RS03975 Genome accession   NZ_CP014057
Coordinates   836431..836850 (+) Length   139 a.a.
NCBI ID   WP_011302684.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 831431..841850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL494_RS03945 (AL494_03915) atpD 831547..832959 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  AL494_RS03950 (AL494_03920) - 832979..833383 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  AL494_RS03955 (AL494_03925) - 833645..833878 (+) 234 WP_011302682.1 DUF1146 family protein -
  AL494_RS03960 (AL494_03930) murA 833985..835250 (+) 1266 WP_048787213.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AL494_RS03965 (AL494_03935) fabZ 835305..835742 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AL494_RS03970 (AL494_03940) - 835800..836240 (-) 441 WP_002482730.1 YwpF-like family protein -
  AL494_RS03975 (AL494_03945) ssb 836431..836850 (+) 420 WP_011302684.1 single-stranded DNA-binding protein Machinery gene
  AL494_RS03980 (AL494_03950) - 837276..837992 (+) 717 WP_011302685.1 transglycosylase family protein -
  AL494_RS03985 (AL494_03955) tenA 838299..838988 (+) 690 WP_011302686.1 thiaminase II -
  AL494_RS03990 (AL494_03960) thiD 838981..839802 (+) 822 WP_011302687.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AL494_RS03995 (AL494_03965) thiM 839795..840586 (+) 792 WP_011302688.1 hydroxyethylthiazole kinase -
  AL494_RS04000 (AL494_03970) thiE 840586..841224 (+) 639 WP_011302689.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16059.43 Da        Isoelectric Point: 7.7651

>NTDB_id=168152 AL494_RS03975 WP_011302684.1 836431..836850(+) (ssb) [Staphylococcus saprophyticus strain FDAARGOS_137]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=168152 AL494_RS03975 WP_011302684.1 836431..836850(+) (ssb) [Staphylococcus saprophyticus strain FDAARGOS_137]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment