Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AL539_RS08750 | Genome accession | NZ_CP014053 |
| Coordinates | 1559069..1559938 (+) | Length | 289 a.a. |
| NCBI ID | WP_017635919.1 | Uniprot ID | A0A2I3C9C8 |
| Organism | Vibrio alginolyticus strain FDAARGOS_108 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1554069..1564938
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL539_RS08730 (AL539_16960) | nadC | 1554485..1555372 (+) | 888 | WP_104975579.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AL539_RS08735 (AL539_16965) | - | 1555635..1556075 (+) | 441 | WP_017447682.1 | pilin | - |
| AL539_RS08740 (AL539_16970) | pilB | 1556072..1557757 (+) | 1686 | WP_053304129.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL539_RS08745 (AL539_16975) | pilC | 1557781..1559004 (+) | 1224 | WP_047102659.1 | type II secretion system F family protein | Machinery gene |
| AL539_RS08750 (AL539_16980) | pilD | 1559069..1559938 (+) | 870 | WP_017635919.1 | A24 family peptidase | Machinery gene |
| AL539_RS08755 (AL539_16985) | coaE | 1559939..1560553 (+) | 615 | WP_065274841.1 | dephospho-CoA kinase | - |
| AL539_RS08760 (AL539_16990) | zapD | 1560581..1561321 (+) | 741 | WP_005373086.1 | cell division protein ZapD | - |
| AL539_RS08765 (AL539_16995) | yacG | 1561480..1561674 (+) | 195 | WP_017635922.1 | DNA gyrase inhibitor YacG | - |
| AL539_RS08770 (AL539_17000) | rplS | 1562501..1562854 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| AL539_RS08775 (AL539_17005) | trmD | 1562896..1563657 (-) | 762 | WP_005385420.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AL539_RS08780 (AL539_17010) | rimM | 1563685..1564233 (-) | 549 | WP_005379964.1 | ribosome maturation factor RimM | - |
| AL539_RS08785 (AL539_17015) | rpsP | 1564263..1564511 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32563.76 Da Isoelectric Point: 6.8450
>NTDB_id=168074 AL539_RS08750 WP_017635919.1 1559069..1559938(+) (pilD) [Vibrio alginolyticus strain FDAARGOS_108]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
Nucleotide
Download Length: 870 bp
>NTDB_id=168074 AL539_RS08750 WP_017635919.1 1559069..1559938(+) (pilD) [Vibrio alginolyticus strain FDAARGOS_108]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTATTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTATTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
91.349 |
100 |
0.913 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
52.222 |
93.426 |
0.488 |
| pilD | Acinetobacter nosocomialis M2 |
51.852 |
93.426 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.653 |
95.848 |
0.457 |