Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AL539_RS08700 Genome accession   NZ_CP014053
Coordinates   1545590..1546204 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540590..1551204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS08680 (AL539_16910) - 1540874..1541791 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  AL539_RS08685 (AL539_16915) - 1542042..1543712 (-) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  AL539_RS08690 (AL539_16920) can 1543994..1544662 (+) 669 WP_005379996.1 carbonate dehydratase -
  AL539_RS08695 (AL539_16925) hpt 1544740..1545270 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  AL539_RS08700 (AL539_16930) opaR 1545590..1546204 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  AL539_RS08705 (AL539_16935) lpdA 1546350..1547777 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  AL539_RS08710 (AL539_16940) aceF 1548045..1549937 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=168071 AL539_RS08700 WP_005379994.1 1545590..1546204(+) (opaR) [Vibrio alginolyticus strain FDAARGOS_108]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=168071 AL539_RS08700 WP_005379994.1 1545590..1546204(+) (opaR) [Vibrio alginolyticus strain FDAARGOS_108]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTTTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAACTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment