Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AL539_RS02080 Genome accession   NZ_CP014053
Coordinates   183224..183811 (+) Length   195 a.a.
NCBI ID   WP_005378007.1    Uniprot ID   A0A2I3BZD4
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 178224..188811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS02050 (AL539_10300) panP 178303..179949 (-) 1647 WP_104975246.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  AL539_RS02055 (AL539_10305) - 180161..180673 (-) 513 WP_104975247.1 hypothetical protein -
  AL539_RS02060 (AL539_10310) - 180882..181787 (-) 906 WP_005378011.1 lysine exporter LysO family protein -
  AL539_RS02065 (AL539_10315) - 181934..182854 (-) 921 WP_005378009.1 HDOD domain-containing protein -
  AL539_RS02080 (AL539_10330) tfoX 183224..183811 (+) 588 WP_005378007.1 TfoX/Sxy family DNA transformation protein Regulator
  AL539_RS02085 (AL539_10335) - 184005..184553 (-) 549 WP_005378006.1 hypothetical protein -
  AL539_RS02090 (AL539_10340) - 184845..185342 (-) 498 WP_005378005.1 response regulator -
  AL539_RS02095 (AL539_10345) - 185339..187279 (-) 1941 WP_104975248.1 ATP-binding protein -
  AL539_RS02100 (AL539_10350) - 187466..188734 (+) 1269 WP_104975249.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22412.73 Da        Isoelectric Point: 8.0901

>NTDB_id=168065 AL539_RS02080 WP_005378007.1 183224..183811(+) (tfoX) [Vibrio alginolyticus strain FDAARGOS_108]
MDMTDQAFFKYVRTFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLSCEKYKHVKKQTTATVNYYDV
TDLFESGYVGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKTAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=168065 AL539_RS02080 WP_005378007.1 183224..183811(+) (tfoX) [Vibrio alginolyticus strain FDAARGOS_108]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCACCTTCAGTGAGTACCAAAAACGTTCTATGTTCGGTGGTAT
TGGTTTATTCACCGATGATGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGGCTAGATG
AAGTGTTTACTCAACTGAGCTGTGAGAAGTATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGATGTA
ACCGATTTATTCGAATCCGGATATGTAGGGCTTGATGAACTGGTACAGAAATCAATTGAATACTCAATTAAGGAACGGAA
ATATCAAAAGTCCTCTGCCAGTAGACGCTTAAGAGACTTACCCAACATGCAACTAACCCTTGAACGTATGGTCAAGAAAG
CCGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAACGGCTTACGGTAAT
GATGTTGATGTAAAGCTACTGTGGAAATTTGCTGGTGCAACTGATGGCGTACATTGGAAACTGATCCAAGAGCCGCGTAA
AAAACAGTTATTGGCACTGTGTGACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3BZD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

89.744

100

0.897
  tfoX Vibrio campbellii strain DS40M4

87.692

100

0.877
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

66.667

98.462

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

66.667

98.462

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

66.667

98.462

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

66.667

98.462

0.656
  tfoX Vibrio cholerae strain A1552

66.667

98.462

0.656
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585

Multiple sequence alignment