Detailed information NTG0168041

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WH25_RS10055
• Genome accession: NZ_CP017295
• Coordinates: 2104330..2106444 (-)
• Length: 704 a.a.
• NCBI ID: WP_046164691.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain IE35
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2099330..2111444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WH25_RS10035 (WH25_10035)	eeP	2100590..2101846 (-)	1257	WP_172858967.1	RIP metalloprotease RseP	Regulator
WH25_RS10040 (WH25_10040)	-	2102003..2102806 (-)	804	WP_012130880.1	phosphatidate cytidylyltransferase	-
WH25_RS10045 (WH25_10045)	-	2102815..2103564 (-)	750	WP_008809837.1	isoprenyl transferase	-
WH25_RS10050 (WH25_10050)	yajC	2103824..2104156 (-)	333	WP_012130881.1	preprotein translocase subunit YajC	-
WH25_RS10055 (WH25_10055)	clpC	2104330..2106444 (-)	2115	WP_046164691.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
WH25_RS10060 (WH25_10060)	-	2106697..2108688 (-)	1992	WP_046164692.1	sucrose-specific PTS transporter subunit IIBC	-
WH25_RS10065 (WH25_10065)	-	2108886..2110340 (+)	1455	WP_046164759.1	sucrose-6-phosphate hydrolase	-
WH25_RS10070 (WH25_10070)	-	2110321..2111286 (+)	966	WP_046164693.1	LacI family DNA-binding transcriptional regulator	-

Sequence

Protein

• Length: 704 a.a.
• Molecular weight: 77720.59 Da
• Isoelectric Point: 4.7967

>NTDB_id=168041 WH25_RS10055 WP_046164691.1 2104330..2106444(-) (clpC) [Streptococcus gordonii strain IE35]
MNNNYNNFNNMDDLFNQLMAGMRGYNSENRRYLINGREVTPEEFAQYRATGKLPGQGASEQDLQTAGHGPKQDGILAKLG
RNLTQEARDGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISVDISGL
EAGTQYRGSFEENIQNLVNEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTYKILQGIRDLYEKHHNVILPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAA
QHPVTDVHAVEHEIAEQKDKQEAAVEKEDFEAALNAKTRIEELEKKIQNHTEDMKVTATVNDVAESVERMTGVPVSQMGA
SDIERLKGMNDRLKAKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKEAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNT
VIIATSNAGFGYEAGLEEDAEKPDLMDRLKAYFRPEFLNRFNAVIEFSHLKKEDLMEIVNLMLIEVNQTLSKKEIDLAVS
DAAKEFLRDAGYDQVMGVRPLRRVIEQQIRDKVTDFHLDNLDAKHLTADLEDGVLVIKEKEGAE

Nucleotide

• Length: 2115 bp

>NTDB_id=168041 WH25_RS10055 WP_046164691.1 2104330..2106444(-) (clpC) [Streptococcus gordonii strain IE35]
ATGAATAACAATTACAACAATTTTAATAATATGGATGACTTATTTAATCAATTAATGGCTGGAATGCGTGGTTACAATAG
TGAAAACCGTCGTTACCTAATTAACGGCCGTGAAGTGACGCCAGAGGAATTTGCGCAATATCGTGCGACTGGTAAACTAC
CTGGTCAAGGAGCGAGTGAACAGGACTTACAAACTGCTGGTCATGGACCTAAGCAGGATGGTATCCTGGCTAAGCTGGGT
CGTAATCTGACTCAAGAAGCTCGTGATGGTAAATTAGATCCAGTCATTGGACGTAATAAGGAAATCCAAGAAACAGCTGA
AATCCTTTCTCGCCGGACTAAGAACAATCCAGTTCTGGTCGGAGATGCAGGTGTCGGAAAGACCGCTGTAGTGGAAGGTT
TGGCTCAGGCTATCGTCAATGGTGATGTGCCAGCGGCCATCAAGAACAAAGAAATTATTTCTGTTGATATTTCTGGCCTG
GAAGCTGGTACCCAGTATCGTGGTAGCTTTGAAGAAAATATCCAAAACTTGGTCAATGAAGTCAAAGAAGCCGGCAACAT
CATCCTATTCTTTGATGAAATCCATCAAATCCTAGGAGCAGGATCTACCGGTGGAGATAGTGGCTCTAAGGGACTAGCGG
ATATTCTCAAACCAGCGCTTTCTCGTGGTGAGTTGACAGTTATCGGGGCTACTACTCAGGATGAGTACCGTAACACTATT
CTCAAAAATGCGGCTCTAGCTCGTCGTTTCAATGAGGTTAAAGTCAATGCACCATCTGCAGAAGATACCTATAAAATCCT
TCAAGGTATTCGTGACTTGTACGAAAAGCACCACAATGTCATCCTGCCAGATGAAGTGCTGAAAGCTGCTGTGGACTACT
CTGTTCAGTATATTCCACAACGGAGCTTGCCAGACAAGGCAATTGACCTGGTTGATGTAACGGCAGCCCACTTGGCAGCC
CAACATCCAGTGACTGATGTTCATGCGGTCGAGCATGAAATCGCTGAGCAAAAAGACAAGCAGGAAGCCGCTGTTGAAAA
AGAAGATTTCGAAGCAGCTCTCAATGCTAAGACTCGTATCGAAGAGCTTGAAAAGAAAATTCAAAACCATACTGAGGATA
TGAAGGTGACGGCAACAGTCAACGATGTAGCAGAATCTGTTGAACGTATGACGGGTGTGCCGGTATCTCAAATGGGTGCT
AGTGATATTGAGCGCCTCAAGGGCATGAATGACCGTCTCAAAGCTAAAGTAATCGGCCAAGACAAGGCTGTAGAAGCTGT
GGCTAGAGCTATCCGCCGTAACCGTGCAGGTTTTGACGAAGGGAATCGCCCAATTGGTAGCTTCCTCTTTGTTGGTCCGA
CAGGTGTTGGTAAGACTGAGCTTGCTAAGCAACTAGCTTTGGATATGTTTGGTACTAAAGAAGCCATCATTCGTCTGGAT
ATGTCTGAATACTCTGATCGGACTGCTGTGTCCAAGCTGATTGGTACGACTGCAGGATATGTTGGTTATGATGACAATAA
CAACACTCTGACAGAGCGTGTACGTCGCAATCCATATTCTATCATTCTCTTGGATGAGATTGAAAAGGCTGATCCACAAG
TGATTACCCTTCTTCTGCAAGTTCTGGATGACGGTCGTTTGACAGATGGTCAAGGGAATACAGTTAACTTCAAGAACACG
GTTATCATTGCAACTTCCAATGCTGGATTTGGCTACGAAGCTGGCTTAGAAGAGGATGCAGAAAAACCTGATTTGATGGA
CCGTCTCAAAGCTTACTTCCGTCCAGAATTCCTCAATCGTTTCAATGCGGTTATTGAGTTCTCTCATCTTAAGAAAGAAG
ACTTGATGGAAATTGTCAATCTCATGCTGATTGAAGTAAATCAAACCTTGAGCAAAAAAGAAATTGATCTTGCAGTATCT
GATGCAGCTAAGGAATTCCTACGTGACGCTGGTTATGACCAAGTCATGGGTGTTCGTCCACTCCGTAGAGTTATCGAGCA
ACAAATTCGTGACAAGGTGACTGACTTCCACTTGGATAATCTAGATGCTAAGCATTTGACAGCTGATTTGGAAGATGGTG
TCTTGGTTATTAAGGAAAAGGAGGGGGCTGAGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA lid domain (AAA_lid_9) (259-354)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-603)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	50.308	92.33	0.464
clpE	Streptococcus mutans UA159	49.377	91.193	0.45
clpE	Streptococcus pneumoniae Rx1	48.607	91.761	0.446
clpE	Streptococcus pneumoniae D39	48.607	91.761	0.446
clpE	Streptococcus pneumoniae R6	48.607	91.761	0.446
clpE	Streptococcus pneumoniae TIGR4	48.367	91.335	0.442
clpC	Bacillus subtilis subsp. subtilis str. 168	45.846	92.33	0.423
clpC	Streptococcus pneumoniae D39	43.087	88.352	0.381
clpC	Streptococcus pneumoniae TIGR4	43.087	88.352	0.381
clpC	Streptococcus pneumoniae Rx1	43.087	88.352	0.381
clpC	Streptococcus thermophilus LMG 18311	42.811	87.926	0.376
clpC	Streptococcus mutans UA159	42.673	88.21	0.376
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.019	87.5	0.376
clpC	Streptococcus thermophilus LMD-9	42.301	87.642	0.371