Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL549_RS22550 Genome accession   NZ_CP014049
Coordinates   2987024..2987734 (-) Length   236 a.a.
NCBI ID   WP_072610240.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_119     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2982024..2992734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL549_RS22520 (AL549_20945) gspL 2982209..2983408 (+) 1200 WP_039541397.1 type II secretion system protein GspL -
  AL549_RS22525 (AL549_20950) - 2983416..2983907 (+) 492 WP_039541394.1 type II secretion system protein M -
  AL549_RS22530 (AL549_20955) - 2983909..2984670 (+) 762 WP_038964102.1 type II secretion system protein N -
  AL549_RS22535 (AL549_20960) cysQ 2984797..2985624 (-) 828 WP_045596122.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL549_RS22540 (AL549_20965) nudE 2985639..2986193 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  AL549_RS22545 (AL549_20970) nfuA 2986309..2986893 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  AL549_RS22550 (AL549_23935) comF 2987024..2987734 (-) 711 WP_072610240.1 ComF family protein Machinery gene
  AL549_RS22555 (AL549_20980) bioH 2987823..2988590 (+) 768 WP_061059042.1 pimeloyl-ACP methyl ester esterase BioH -
  AL549_RS22560 (AL549_20985) - 2988728..2989198 (+) 471 WP_011078928.1 hypothetical protein -
  AL549_RS22565 (AL549_20990) - 2989414..2991738 (-) 2325 WP_039541385.1 Tex family protein -
  AL549_RS22570 (AL549_20995) greB 2991974..2992456 (+) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27276.03 Da        Isoelectric Point: 9.7910

>NTDB_id=168040 AL549_RS22550 WP_072610240.1 2987024..2987734(-) (comF) [Vibrio vulnificus strain FDAARGOS_119]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=168040 AL549_RS22550 WP_072610240.1 2987024..2987734(-) (comF) [Vibrio vulnificus strain FDAARGOS_119]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCACAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCGTAT
CGCTTTCCAGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTTTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCCTATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACAGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment