Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WH25_RS03060 Genome accession   NZ_CP017295
Coordinates   643492..644280 (+) Length   262 a.a.
NCBI ID   WP_008808441.1    Uniprot ID   A8AVD7
Organism   Streptococcus gordonii strain IE35     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 638492..649280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS03050 (WH25_03050) - 638940..640154 (+) 1215 WP_008808439.1 pyridoxal phosphate-dependent aminotransferase -
  WH25_RS03055 (WH25_03055) - 640531..643209 (+) 2679 WP_046165061.1 SEC10/PgrA surface exclusion domain-containing protein -
  WH25_RS03060 (WH25_03060) codY 643492..644280 (+) 789 WP_008808441.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WH25_RS03065 (WH25_03065) - 644280..644837 (+) 558 WP_046165062.1 cysteine hydrolase family protein -
  WH25_RS03070 (WH25_03070) aspS 645237..646973 (+) 1737 WP_046165063.1 aspartate--tRNA ligase -
  WH25_RS03075 (WH25_03075) gatC 647176..647478 (+) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  WH25_RS03080 (WH25_03080) gatA 647478..648944 (+) 1467 WP_046165064.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29801.06 Da        Isoelectric Point: 5.0874

>NTDB_id=167969 WH25_RS03060 WP_008808441.1 643492..644280(+) (codY) [Streptococcus gordonii strain IE35]
MAHLLEKTRKITSILKRSEEQLQEELPYNDITRQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKMFPDDYI
RSANLIYDTEANLPVEHELSIFPVETQSDFPDGLTTIAPIHVSGIRLGSLIIWRNDEKFDNDDLVLVEISSTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGHLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=167969 WH25_RS03060 WP_008808441.1 643492..644280(+) (codY) [Streptococcus gordonii strain IE35]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCTATTTTGAAGCGCTCTGAAGAGCAGCTTCAAGAAGAGTTGCC
ATACAATGACATTACAAGACAGTTGGCAGAAATTATGGACTGTAATGCTTGTATTGTTAATAGCAAGGGACGTTTGTTGG
GTTACTTTATGCGGTACAAAACAAACAATGACCGTGTAGAGGCCTTCTACCAAACTAAAATGTTCCCAGATGATTATATT
CGTTCTGCTAATTTAATTTACGATACAGAGGCTAATTTGCCAGTCGAGCATGAATTATCCATCTTTCCGGTTGAGACACA
GTCGGATTTTCCAGATGGTTTGACAACCATTGCACCTATTCATGTTTCAGGGATTCGTTTGGGATCTTTGATTATTTGGC
GAAATGACGAGAAATTTGATAATGATGATTTGGTCTTAGTAGAAATTTCAAGTACCGTTGTGGGCATTCAGTTATTGAAT
TTCCAAAGAGAAGAAGATGAAAAGAATATCCGTCGTCGTACAGCAGTGACAATGGCAGTAAACACTTTGTCTTATTCAGA
ATTACGGGCTGTTTCGGCCATTTTAGGAGAGCTAAATGGGAATGAAGGCCACTTGACAGCTTCTGTCATTGCTGACCGTA
TTGGAATTACACGGTCTGTTATTGTCAATGCCTTGCGTAAGCTAGAGAGTGCTGGGATCATTGAGAGCCGGTCTTTGGGA
ATGAAAGGGACCTATCTGAAAGTGCTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45

Multiple sequence alignment