Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL543_RS14970 Genome accession   NZ_CP014043
Coordinates   1711021..1712391 (+) Length   456 a.a.
NCBI ID   WP_081096368.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706021..1717391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS14950 (AL543_14205) rsxA 1706359..1706940 (-) 582 WP_000141446.1 electron transport complex subunit RsxA -
  AL543_RS14955 (AL543_14210) tnpA 1707448..1707909 (+) 462 WP_061050941.1 IS200/IS605 family transposase -
  AL543_RS14965 (AL543_14220) uvrB 1708683..1710713 (+) 2031 WP_000029993.1 excinuclease ABC subunit UvrB -
  AL543_RS14970 (AL543_14225) luxO 1711021..1712391 (+) 1371 WP_081096368.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL543_RS14975 (AL543_14230) luxU 1712395..1712736 (+) 342 WP_061052321.1 quorum-sensing phosphorelay protein LuxU -
  AL543_RS14980 (AL543_14235) - 1712725..1713615 (-) 891 WP_033932396.1 YvcK family protein -
  AL543_RS14985 (AL543_14240) moaA 1713922..1714911 (+) 990 WP_061053054.1 GTP 3',8-cyclase MoaA -
  AL543_RS14990 (AL543_14245) moaB 1714971..1715483 (+) 513 WP_000509704.1 molybdenum cofactor biosynthesis protein B -
  AL543_RS14995 (AL543_14250) moaC 1715494..1715973 (+) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL543_RS15000 (AL543_14255) moaD 1715970..1716215 (+) 246 WP_061052322.1 molybdopterin synthase sulfur carrier subunit -
  AL543_RS15005 (AL543_14260) moaE 1716217..1716696 (+) 480 WP_061052323.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50939.24 Da        Isoelectric Point: 5.7411

>NTDB_id=167894 AL543_RS14970 WP_081096368.1 1711021..1712391(+) (luxO) [Vibrio mimicus strain FDAARGOS_112]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLHAVKQKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFIRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPTPLNQMPEPVNRALPLANENKVVSVH
EIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVKEKEKER

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=167894 AL543_RS14970 WP_081096368.1 1711021..1712391(+) (luxO) [Vibrio mimicus strain FDAARGOS_112]
ATGGTAGAAGATACGGCATCGGTTGCGGCGCTGTATCGTTCTTACCTCACTCCACTGGATATTGATATCAATATCGTCGG
AACTGGACGCGATGCCATTGAAAGTATTGGCCGCCGCGAACCTGATTTGATCCTGCTTGATTTACGTTTGCCTGATATGA
CTGGTATGGACGTGTTACACGCAGTAAAACAGAAATCGCCCGATGTTCCCATCGTGTTTATGACCGCACATGGCTCGATT
GATACAGCGGTTGAAGCGATGCGCCACGGCGCTCAAGACTTTTTGATTAAGCCTTGTGAAGCGGATCGTCTACGCGTAAC
AGTGAATAACGCGATTCGTAAAGCGTCGAAACTCAAAAACGACGTTGATAATAAAAATCAAAATTACCAAGGCTTTATCG
GCAGCAGCCAAACCATGCAAGCCGTTTACCGCACTATCGATTCTGCGGCGAGCAGTAAAGCCAGTATCTTCATTACCGGC
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCATGCTGCGAGTAAACGAGGCGATAAACCGTTTATTGCAAT
TAACTGTGCAGCCATTCCTAAAGATTTGATCGAAAGTGAACTGTTTGGCCACGTAAAAGGGGCTTTTACGGGAGCGGCGA
CTGAACGACAAGGGGCTGCTGAAGCTGCTGATGGTGGCACACTATTTTTGGATGAGCTTTGCGAAATGGATTTGGATTTA
CAGACCAAACTACTGCGCTTCATCCAAACTGGGACTTTCCAAAAGGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
CTTTGTTTGTGCAACCAACCGCGACCCATGGAAAGAAGTGCAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGTTTGT
ATGTGATCCCTCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATTGAAATTGCCTATTCGCTGCTTGGCTTC
ATGTCCAAAGAGGAAGGCAAGGACTTCATACGTTTGTCGGCAGAAGTGGTCGAACGCTTCCGTCACTATGAGTGGCCGGG
TAACGTGCGCCAACTGCAAAACGTATTGCGTAACGTTGTGGTGTTGAATGAAGGGCGTGAAATTACTTTGGATATGTTGC
CAACCCCGCTTAACCAAATGCCAGAGCCAGTTAATCGAGCGTTGCCTCTCGCGAATGAAAATAAAGTCGTGTCGGTGCAT
GAAATTTTCCCGTTGTGGATGACGGAGAAGCAAGCCATAGAACAAGCTATTGAAGCTTGTGATGGCAATATTCCTCGTGC
GGCGACCTATTTGGATGTCAGCCCATCGACGATTTACCGCAAGCTTCAAGCTTGGAATGAGAAAGTCAAAGAAAAAGAGA
AGGAGCGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

97.588

100

0.976
  pilR Pseudomonas aeruginosa PAK

38.106

99.561

0.379

Multiple sequence alignment