Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   AL543_RS12790 Genome accession   NZ_CP014043
Coordinates   1232934..1233545 (-) Length   203 a.a.
NCBI ID   WP_000340102.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227934..1238545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS12760 (AL543_12020) sspB 1228010..1228486 (+) 477 WP_061052085.1 ClpXP protease specificity-enhancing factor -
  AL543_RS12765 (AL543_12025) - 1228555..1229124 (-) 570 WP_061052086.1 BON domain-containing protein -
  AL543_RS12770 (AL543_12030) - 1229127..1229717 (-) 591 WP_000887295.1 phosphoheptose isomerase -
  AL543_RS12775 (AL543_12035) - 1229721..1230089 (-) 369 WP_080553783.1 YraN family protein -
  AL543_RS12780 (AL543_12040) - 1230076..1231881 (-) 1806 WP_061052087.1 penicillin-binding protein activator -
  AL543_RS12785 (AL543_12045) rsmI 1231951..1232817 (+) 867 WP_000131534.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AL543_RS12790 (AL543_12050) hapR 1232934..1233545 (-) 612 WP_000340102.1 quorum-sensing master transcriptional regulator HapR Regulator
  AL543_RS12795 (AL543_12055) hpt 1233839..1234372 (+) 534 WP_000683346.1 hypoxanthine phosphoribosyltransferase -
  AL543_RS12800 (AL543_12060) can 1234466..1235134 (-) 669 WP_001114113.1 carbonate dehydratase -
  AL543_RS12805 (AL543_12065) - 1235283..1236935 (+) 1653 WP_000484920.1 SulP family inorganic anion transporter -
  AL543_RS12810 (AL543_12070) - 1237126..1238043 (+) 918 WP_061052088.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23619.27 Da        Isoelectric Point: 6.3371

>NTDB_id=167890 AL543_RS12790 WP_000340102.1 1232934..1233545(-) (hapR) [Vibrio mimicus strain FDAARGOS_112]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLEAKSNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=167890 AL543_RS12790 WP_000340102.1 1232934..1233545(-) (hapR) [Vibrio mimicus strain FDAARGOS_112]
ATGGACGCATCAATCGAAAAACGCCCTCGGACTCGGCTATCTCCACAAAAACGTAAACTACAACTGATGGAAATCGCATT
AGAAGTGTTTGCAACTCGCGGTATTGGCCGCGGCGGTCATGCCGACATCGCTGAAATTGCGCAAGTTTCAGTGGCGACAG
TATTTAACTATTTCCCAACTCGTGAAGATCTGGTCGACGATGTACTGAACTTTGTAGTTCGTCAGTATTCCAACTTCCTT
ACTGATCACATCGATCTAGATTTAGAAGCTAAAAGCAACCTACAAACACTGTGCAAAGAAATGGTGAAACTCGCCATGAC
TGACTGCCACTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCGACTCGTGATGAAGTTTGGCCGTTGTTTGTTTCGACCA
ACCGCACCAACCAGTTACTGATCAAAAACATGTTCATCAAAGCGATGGAGCGTGGTGAATTGTGTGAGAAACACGATGTA
GACAATATGGCAAGCCTGTTCCACGGCATCTTCTACTCTATCTTCCTACAAGTAAATCGCTTGGGCGAACAGGAAGCAGT
GTATAAGTTAGTCGATAGCTATCTCAACATGCTGTGTATCTACAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.737

97.537

0.719

Multiple sequence alignment