Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   AL543_RS04745 Genome accession   NZ_CP014042
Coordinates   1061126..1063186 (-) Length   686 a.a.
NCBI ID   WP_081096048.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056126..1068186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS04725 (AL543_04665) - 1057377..1058339 (+) 963 WP_061051293.1 TDT family transporter -
  AL543_RS04730 (AL543_04670) - 1058391..1059599 (-) 1209 WP_061050794.1 IS4 family transposase -
  AL543_RS04740 (AL543_04675) cqsA 1059874..1061043 (+) 1170 WP_061051294.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL543_RS04745 (AL543_04680) cqsS 1061126..1063186 (-) 2061 WP_081096048.1 hybrid sensor histidine kinase/response regulator Regulator
  AL543_RS04750 (AL543_04685) - 1063288..1066329 (-) 3042 WP_061051295.1 AAA family ATPase -
  AL543_RS04755 (AL543_04690) - 1066331..1067470 (-) 1140 WP_061051296.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78608.74 Da        Isoelectric Point: 5.4152

>NTDB_id=167863 AL543_RS04745 WP_081096048.1 1061126..1063186(-) (cqsS) [Vibrio mimicus strain FDAARGOS_112]
MTVSMEVIKKVYQYAEPNFSLVGWMGMLGYPAYYFIWEYWFPQTYENLGLRFVAALLFAGLAFRESLPNKWKRYMPYYFL
LTIGFCLPFFFCFMMLMNNWSTIWAMSFMASIFLHILLVHDTKVMALQAITSILMAYVAVYGFTDFQPNTLIEWPYVPVF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMLPKPQAAAQSTYPLDAQELDLLHQILN
EADEVIYSGNNIIDLLLTSIDENRVSTASFKKYAAAEVIEKALKSFPYKNAADQHAIQLDVRQPFDFFGSDTLLTYALFN
LLKNAFYYQKEQFSVCIQIEQSAEHNLIKVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCFS
KHGEWTEFVLTFPRYESKIVREIKTDLLKSKSVIYIGSNQSIVRELNQLAAEEEFGFTALSAQQAVRRQDYEFEFDLILL
DLDDATQQGELLPKLEGTLSFAEGCIGYIYDPSKEYAVNINRYLHIQPISIHSVLKKTSKVIDRLLFEQDSLVMNRNIIP
LQKSRHERRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGLEATHLIRSSDRDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=167863 AL543_RS04745 WP_081096048.1 1061126..1063186(-) (cqsS) [Vibrio mimicus strain FDAARGOS_112]
GTGACGGTGAGCATGGAAGTGATAAAAAAAGTTTACCAGTACGCGGAACCCAATTTTTCATTGGTGGGGTGGATGGGGAT
GCTCGGCTATCCTGCCTATTACTTCATTTGGGAATACTGGTTTCCGCAAACCTATGAAAACTTAGGTTTGCGTTTTGTTG
CTGCATTGTTGTTCGCTGGGCTTGCGTTTCGGGAGTCATTGCCGAATAAGTGGAAGCGGTACATGCCGTACTACTTTTTG
CTCACCATAGGTTTTTGCTTACCTTTTTTCTTTTGTTTCATGATGTTGATGAACAACTGGTCGACCATTTGGGCGATGTC
GTTCATGGCATCCATCTTTTTACACATCCTCTTAGTGCACGATACTAAGGTGATGGCGCTGCAAGCCATTACCTCGATTT
TGATGGCTTATGTGGCGGTGTATGGCTTCACGGATTTCCAACCGAATACCTTGATTGAATGGCCGTATGTGCCTGTTTTC
TTGTTCACTTATGTCTTCGGCAATTTGTGTTTCTTCCGCAACCAAATCTCCCATGAAACTAAAGTCTCCATTGCTAAAAC
ATTTGGTGCGGGGATCGCACATGAAATGCGTAACCCACTGAGTGCCTTGAAAACATCAATAGACGTCATTCGTACCATGC
TTCCTAAGCCTCAGGCAGCCGCACAATCGACTTATCCATTGGATGCACAAGAACTGGATCTTCTACACCAGATTCTGAAT
GAGGCGGATGAAGTTATCTATTCAGGCAATAACATCATTGATTTGTTGTTGACCTCAATCGATGAAAACCGTGTTTCCAC
CGCAAGCTTTAAAAAATACGCTGCGGCTGAAGTGATTGAGAAAGCACTCAAGAGCTTTCCTTATAAAAATGCCGCCGATC
AGCACGCAATACAGTTGGATGTTCGTCAGCCATTCGATTTTTTTGGTAGTGATACCTTGTTGACGTATGCCTTGTTCAAC
CTGCTGAAAAATGCCTTTTATTATCAGAAAGAACAATTTTCCGTTTGTATTCAAATTGAGCAAAGTGCTGAACATAACCT
GATTAAAGTGCGTGATAACGGGGTTGGTATTGCTCCTGAAATGTTGGAAGACATCTTTCGTGACTTTTATACCTTTGGCA
AAAATGGCAGTTATGGCCTAGGATTGCCGTTTTGTCGTAAAGTAATGACGGCATTTGGTGGCACCATTCGCTGTTTTTCT
AAGCATGGTGAGTGGACGGAGTTCGTACTGACGTTCCCACGTTACGAGTCAAAAATCGTTAGAGAAATTAAAACCGATTT
ATTAAAGTCCAAATCAGTTATTTACATAGGCTCGAATCAGTCGATTGTTCGAGAACTGAATCAGTTAGCGGCAGAGGAAG
AGTTTGGCTTTACCGCACTTTCAGCCCAGCAAGCGGTAAGACGGCAAGACTACGAATTTGAATTCGACCTAATCTTACTG
GATCTGGATGATGCCACTCAGCAAGGCGAACTTTTACCCAAACTCGAAGGAACATTGAGTTTCGCGGAAGGCTGTATCGG
GTATATCTATGACCCTAGCAAAGAGTATGCGGTGAACATCAACCGTTACCTGCATATTCAACCGATCAGCATCCATTCCG
TGCTGAAGAAAACCAGCAAAGTCATTGATCGTCTGCTCTTTGAGCAAGACTCTCTGGTGATGAATCGCAACATCATTCCG
CTGCAAAAAAGTCGCCATGAACGGCGAATTCTTGTCGTTGATGACAACCAATCTATCCGTACTTTCACATCGATTTTGCT
TGAACAGCAAGGATATGAGGTTGTGCAAGCGAATGATGGGTGCGAGGTGATCGCTTATATGGATACTCAGACTATCGACT
TAGTGTTGATGGACATTGAGATGCCTAAAATCAGTGGCTTAGAAGCGACACATCTCATCCGAAGCTCTGATCGTGATTAT
AAAAACATTCCTATCATTGGATATACAGGTGATAACAGCCCGAAAACCTTAGCGTTGGTGCAAACATCCGGCATGAATGA
TTTCATTGTTAAGCCTGCTGACCGTGATGTATTACTGAATAAAGTAGCGGCTTGGGTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

84.694

100

0.847

Multiple sequence alignment