Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AL543_RS04740 Genome accession   NZ_CP014042
Coordinates   1059874..1061043 (+) Length   389 a.a.
NCBI ID   WP_061051294.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1058391..1059599 1059874..1061043 flank 275


Gene organization within MGE regions


Location: 1058391..1061043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS04730 (AL543_04670) - 1058391..1059599 (-) 1209 WP_061050794.1 IS4 family transposase -
  AL543_RS04740 (AL543_04675) cqsA 1059874..1061043 (+) 1170 WP_061051294.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43805.10 Da        Isoelectric Point: 6.5549

>NTDB_id=167862 AL543_RS04740 WP_061051294.1 1059874..1061043(+) (cqsA) [Vibrio mimicus strain FDAARGOS_112]
MNRTHLPDFIQDKITHYIENYFDINKNGKHLVLGKQARSEDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRYGPGIIVVDSIYSTLGTVAPLAELVNLSKEFGCALLVDESHSLGTHGPNGAGLLAELNLTHEVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLDIIECADDKRQHLEKMAKKLRIGLTQLGMTIRSESQIIGL
ETGDERNTEKVRDFLENNGLFGSVFCRPATSKNKNIIRLSLNSDVTEKQITRIIEICTDAVKCSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=167862 AL543_RS04740 WP_061051294.1 1059874..1061043(+) (cqsA) [Vibrio mimicus strain FDAARGOS_112]
ATGAATAGAACACATCTTCCTGATTTTATTCAGGATAAGATAACTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGCAAACATCTAGTATTGGGAAAACAAGCTAGAAGTGAAGATATTATTTTGCAAAGTAATGATTATCTCGCACTGGCCA
ATCATCCTTTAATTAAAGCGCGTTTAGCAAAGTCTTTGCTTGAGGAACAGCAGAGTTTATTTATGTCAGCCTCATTCTTA
CAAAATGATTATGACAAACCCATGATAGAGAAGCGCTTGGCCAAGTTCACAGGCTTTGATGAGTGTTTACTGTCTCAATC
CGGTTGGAATGCCAACGTAGGGTTGCTACAAACCATTTGCCAACCTAACACCAATGTCTACATCGACTTTTTCGCTCACA
TGTCATTGTGGGAAGGTGCACGCTATGCGAACGCTCAAGCCCACCCTTTTATGCACAATAACTGTGACCATTTACGTATG
CTCATCCAGCGCTATGGGCCTGGAATCATAGTTGTCGATTCCATTTACAGCACTCTTGGCACTGTTGCGCCACTGGCAGA
GCTAGTCAATCTCAGTAAGGAATTTGGCTGCGCTTTACTGGTTGATGAATCGCACTCTTTGGGCACGCACGGCCCTAACG
GTGCTGGTTTACTCGCTGAGTTGAACCTCACCCATGAAGTGCATTTCATGACCGCCAGCTTAGCCAAAACCTTTGCTTAT
CGAGCTGGAGCGATTTGGTGTAACAATGAGGTCAACCGTTGCGTGCCATTTATTAGCTATCCGGCGATTTTTAGTTCGAC
CTTACTTCCTTATGAAGCGGCTGGTTTAGAAACCACATTAGATATTATTGAATGTGCGGATGATAAACGGCAGCACTTAG
AAAAAATGGCCAAAAAACTGCGCATAGGGTTAACCCAATTAGGCATGACAATTCGTAGTGAAAGCCAAATTATTGGTTTA
GAAACGGGGGATGAGCGAAATACAGAAAAAGTCCGTGACTTTTTAGAAAACAATGGCTTATTTGGTTCTGTTTTTTGTCG
ACCTGCCACATCAAAAAACAAGAATATTATCCGCTTATCACTCAATAGTGATGTGACGGAAAAGCAAATAACTCGGATAA
TTGAAATATGCACTGATGCAGTAAAATGTTCGGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.003

100

0.91

Multiple sequence alignment