Detailed information NTG0167772

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AL538_RS07095
• Genome accession: NZ_CP014038
• Coordinates: 1398443..1399312 (+)
• Length: 289 a.a.
• NCBI ID: WP_061065379.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain FDAARGOS_107
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1393443..1404312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL538_RS07070 (AL538_06495)	nadC	1393836..1394723 (+)	888	WP_061065376.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AL538_RS07080 (AL538_06505)	-	1394988..1395428 (+)	441	WP_061065377.1	pilin	-
AL538_RS07085 (AL538_06510)	pilB	1395428..1397113 (+)	1686	WP_061065378.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AL538_RS07090 (AL538_06515)	pilC	1397147..1398370 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
AL538_RS07095 (AL538_06520)	pilD	1398443..1399312 (+)	870	WP_061065379.1	prepilin peptidase	Machinery gene
AL538_RS07100 (AL538_06525)	coaE	1399313..1399927 (+)	615	WP_061065380.1	dephospho-CoA kinase	-
AL538_RS07105 (AL538_06530)	zapD	1399955..1400695 (+)	741	WP_005446251.1	cell division protein ZapD	-
AL538_RS07110 (AL538_06535)	yacG	1400758..1400952 (+)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
AL538_RS07115 (AL538_06540)	rplS	1401319..1401672 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AL538_RS07120 (AL538_06545)	trmD	1401714..1402457 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AL538_RS07125 (AL538_06550)	rimM	1402485..1403033 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
AL538_RS07130 (AL538_06555)	rpsP	1403062..1403310 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32562.73 Da
• Isoelectric Point: 7.5715

>NTDB_id=167772 AL538_RS07095 WP_061065379.1 1398443..1399312(+) (pilD) [Vibrio harveyi strain FDAARGOS_107]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLVLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=167772 AL538_RS07095 WP_061065379.1 1398443..1399312(+) (pilD) [Vibrio harveyi strain FDAARGOS_107]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTAGTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCAGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.54	100	0.965
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	53.137	93.772	0.498
pilD	Acinetobacter nosocomialis M2	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	45.29	95.502	0.433