Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AL537_RS20535 Genome accession   NZ_CP014037
Coordinates   865582..866763 (-) Length   393 a.a.
NCBI ID   WP_104972491.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 860582..871763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS20520 (AL537_20515) - 861814..862362 (+) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  AL537_RS20525 (AL537_20520) - 862449..863066 (-) 618 WP_104972489.1 HAD family phosphatase -
  AL537_RS20530 (AL537_20525) cqsS 863434..865479 (+) 2046 WP_104972490.1 hybrid sensor histidine kinase/response regulator Regulator
  AL537_RS20535 (AL537_20530) cqsA 865582..866763 (-) 1182 WP_104972491.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL537_RS20540 (AL537_20535) ylqF 867103..868047 (-) 945 WP_104972492.1 ribosome biogenesis GTPase YlqF -
  AL537_RS20545 (AL537_20540) - 868873..869370 (-) 498 WP_104972493.1 ribbon-helix-helix protein, CopG family -
  AL537_RS20550 (AL537_20545) - 869555..870658 (+) 1104 WP_104972494.1 Rrf2 family transcriptional regulator -
  AL537_RS20555 (AL537_20550) - 870878..871645 (+) 768 WP_104972495.1 inovirus Gp2 family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43716.02 Da        Isoelectric Point: 6.1446

>NTDB_id=167763 AL537_RS20535 WP_104972491.1 865582..866763(-) (cqsA) [Vibrio diabolicus strain FDAARGOS_105]
MSETIQSKPLPPFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGTQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=167763 AL537_RS20535 WP_104972491.1 865582..866763(-) (cqsA) [Vibrio diabolicus strain FDAARGOS_105]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTCCCTTTATTGAGGAACGCCTAGATTTTTATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCACCATGTAATGCCGTTGTTATGCAAAGCAATGATTACC
TGGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCTAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTACGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTACGCAAGGCGCTGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGTGCAGAAAAGCTGGCTAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTCTAGAAGAAAGGAATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment