Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL537_RS15700 Genome accession   NZ_CP014036
Coordinates   3215076..3216485 (-) Length   469 a.a.
NCBI ID   WP_167394171.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3210076..3221485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS15665 (AL537_15660) moaE 3210605..3211060 (-) 456 WP_104971969.1 molybdopterin synthase catalytic subunit MoaE -
  AL537_RS15670 (AL537_15665) moaD 3211062..3211319 (-) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  AL537_RS15675 (AL537_15670) moaC 3211316..3211795 (-) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL537_RS15680 (AL537_15675) moaB 3211822..3212334 (-) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  AL537_RS15685 (AL537_15680) moaA 3212440..3213429 (-) 990 WP_104971970.1 GTP 3',8-cyclase MoaA -
  AL537_RS15690 (AL537_15685) - 3213728..3214624 (+) 897 WP_074191595.1 YvcK family protein -
  AL537_RS15695 (AL537_15690) luxU 3214735..3215079 (-) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  AL537_RS15700 (AL537_15695) luxO 3215076..3216485 (-) 1410 WP_167394171.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL537_RS15705 (AL537_15700) uvrB 3216779..3218809 (-) 2031 WP_065646646.1 excinuclease ABC subunit UvrB -
  AL537_RS15720 (AL537_15715) rsxA 3219773..3220351 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  AL537_RS15725 (AL537_15720) rsxB 3220355..3220951 (+) 597 WP_012841575.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52231.84 Da        Isoelectric Point: 6.2543

>NTDB_id=167759 AL537_RS15700 WP_167394171.1 3215076..3216485(-) (luxO) [Vibrio diabolicus strain FDAARGOS_105]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKS
HPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYR
TIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELAD
GGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLR
ERGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRP
SSVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=167759 AL537_RS15700 WP_167394171.1 3215076..3216485(-) (luxO) [Vibrio diabolicus strain FDAARGOS_105]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATA
GAATTCCAGATCTTATTCTGCTCGATCTTCGTTTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGT
CATCCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGTTCTCA
AGACTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGCTAA
AAAACGAGGCTGATAACCCGGGAAATCAAAGTTATCAAGGCTTTATTGGCAGTAGTCAAACAATGCAACAGGTTTACCGC
ACGATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGA
GGCAATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTG
AGAGTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGCGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGAT
GGTGGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACCGG
CACGTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGATCCATGGA
AAGAGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCGCCTTTACGT
GAACGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTATATGTCGCACGAGGAAGGAAAAAGCTTCGTGCG
TTTTGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCAGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCA
ATATCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCG
TCTTCTGTGGCGAAATTTATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGC
GATAGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTT
ACCGCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(149-314)

Response regulator receiver domain (Response_reg)

(14-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.889

95.949

0.834

Multiple sequence alignment