Detailed information NTG0167730

Bioinformatically predicted

Overview

• Name: priA
• Type: Machinery gene
• Locus tag: A4W87_RS06255
• Genome accession: NZ_CP017273
• Coordinates: 1235775..1238192 (-)
• Length: 805 a.a.
• NCBI ID: WP_076632159.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.1396
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1230775..1243192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W87_RS06235 (A4W87_06195)	pknB	1230818..1232701 (-)	1884	WP_011374401.1	Stk1 family PASTA domain-containing Ser/Thr kinase	Regulator
A4W87_RS06240 (A4W87_06200)	-	1232698..1233444 (-)	747	WP_025015868.1	Stp1/IreP family PP2C-type Ser/Thr phosphatase	-
A4W87_RS06245 (A4W87_06205)	rsmB	1233466..1234809 (-)	1344	WP_076632157.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
A4W87_RS06250 (A4W87_06210)	fmt	1234799..1235755 (-)	957	WP_076632158.1	methionyl-tRNA formyltransferase	-
A4W87_RS06255 (A4W87_06215)	priA	1235775..1238192 (-)	2418	WP_076632159.1	primosomal protein N'	Machinery gene
A4W87_RS06260 (A4W87_06220)	coaBC	1238194..1239411 (-)	1218	WP_011374396.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
A4W87_RS06265 (A4W87_06225)	rpoZ	1239500..1239757 (-)	258	WP_011374395.1	DNA-directed RNA polymerase subunit omega	-
A4W87_RS06270 (A4W87_06230)	gmk	1239762..1240373 (-)	612	WP_076632160.1	guanylate kinase	-
A4W87_RS06275 (A4W87_06235)	-	1240446..1240670 (-)	225	WP_076632161.1	PC4/YdbC family ssDNA-binding protein	-
A4W87_RS06280 (A4W87_06240)	-	1240793..1241116 (+)	324	WP_056948330.1	hypothetical protein	-
A4W87_RS06285 (A4W87_06245)	recN	1241175..1242878 (-)	1704	WP_056948329.1	DNA repair protein RecN	Machinery gene

Sequence

Protein

• Length: 805 a.a.
• Molecular weight: 90631.12 Da
• Isoelectric Point: 7.6833

>NTDB_id=167730 A4W87_RS06255 WP_076632159.1 1235775..1238192(-) (priA) [Latilactobacillus sakei strain TMW 1.1396]
MPQIAKVIVDVPTMQTNRPYDYQVPVTLVDVIQPGMRVIIPFGNGDRKIQGFVLQVLDQPSFTGQLKAIEAVVDLTPAVN
PELLSLSDWLAQQTYAFQITCLQTMLPSVMRAKYTKTATLTDEIPTDLQASLFNGNDELTFDQNLVPDKLKQLMQLQRQG
KISVTYHVDNRAQVKQLTAIEPALSFEQLEEARMGLRKSAQKQSQLISYLQTLIDQEAPTLLKTILEKTTFTRENIRIGA
EKGWLRQVKVEAYRNPYANAVQPTHKMTLTSEQETAVDAVVQSASTDASEVFLIEGVTGSGKTEVYLQTIDAVLQQGKTA
LMLVPEIALTPQMVQRVKGRFGDLVAVLHSGLSEGEKYDEWRRIERKEARVVVGARSAVFAPLEDIGVIIMDEEHEASYK
QDESPRYHARDVAIWRSQYHNCPVILGSATPSLESRARAQKDVYHLIRLTQRVNQQALPAVELVDMREAMRVQKASNFSP
ALLAGIKERMQKGEQSVLLLNRRGFSSFIMCRDCGFVLQCPNCDISLTLHMDTHSMKCHYCGHEEAIPKICPSCQSRQIR
YFGTGTQKVEAELQELIPEARILRMDVDTTRKKGAHAKLLKKFGDHEADILLGTQMIAKGLDFPDVTLVGVINADTALGL
PDFRASERTFQLLTQVSGRAGRADKVGQVIVQSYNPENYAIQFAKQHDYEGFYQYEMAVRHRGGYPPYYFTVKVTVSHPE
EALAAKKSFQIAKQMRPILSDQALILGPTPKSIARINNRYFYQIVIKYKQEPQLQAKLAEILETTQIDTRHGFKIGLDNE
PLQFT

Nucleotide

• Length: 2418 bp

>NTDB_id=167730 A4W87_RS06255 WP_076632159.1 1235775..1238192(-) (priA) [Latilactobacillus sakei strain TMW 1.1396]
ATGCCACAGATTGCTAAAGTAATCGTTGATGTGCCGACAATGCAAACTAATCGGCCATATGATTATCAGGTACCGGTCAC
TTTAGTTGATGTCATTCAACCTGGGATGCGGGTTATTATTCCGTTTGGAAATGGCGATCGTAAGATTCAGGGCTTTGTCT
TGCAAGTTTTAGACCAGCCAAGCTTTACGGGCCAATTAAAGGCAATCGAGGCAGTTGTTGATTTAACGCCAGCGGTTAAC
CCTGAATTACTATCACTTTCGGATTGGTTAGCACAACAGACGTATGCTTTTCAGATCACGTGTCTGCAGACGATGTTACC
CAGTGTGATGCGGGCTAAATATACGAAAACTGCGACGTTAACTGATGAAATTCCAACGGACTTACAGGCCAGTCTGTTCA
ATGGCAATGATGAGTTGACTTTTGATCAGAATCTGGTGCCTGATAAGTTAAAACAACTCATGCAATTGCAACGCCAAGGT
AAAATTAGCGTCACTTATCACGTTGACAACCGGGCACAAGTTAAGCAATTAACGGCGATTGAGCCCGCACTGAGTTTTGA
ACAATTGGAAGAAGCACGGATGGGTTTACGAAAGTCAGCCCAGAAGCAAAGCCAATTAATCAGTTATCTGCAAACGCTGA
TTGATCAAGAGGCACCGACTTTATTAAAAACGATTTTAGAAAAAACAACTTTTACGCGGGAAAATATTCGAATCGGTGCG
GAAAAAGGCTGGTTACGCCAAGTTAAGGTGGAAGCTTACCGGAATCCGTACGCTAATGCTGTTCAACCAACCCACAAAAT
GACGCTAACGAGCGAACAAGAAACCGCAGTTGATGCGGTCGTTCAATCCGCATCAACGGATGCCTCAGAAGTATTCTTAA
TTGAAGGTGTCACTGGCAGTGGGAAGACCGAAGTTTATTTACAAACAATTGATGCCGTCTTGCAACAAGGGAAGACCGCA
CTGATGTTAGTTCCTGAAATTGCCTTGACGCCGCAGATGGTGCAACGCGTGAAGGGCCGCTTTGGTGATTTAGTCGCTGT
GTTACATAGTGGCTTGTCTGAAGGCGAAAAATACGACGAATGGCGGCGCATAGAACGCAAAGAAGCGCGCGTGGTCGTCG
GTGCCCGCTCAGCCGTTTTTGCGCCACTTGAAGATATCGGCGTGATTATTATGGACGAAGAACATGAAGCCAGTTATAAG
CAAGACGAAAGTCCCCGTTATCATGCACGCGACGTTGCGATTTGGCGGAGTCAGTATCATAACTGCCCGGTCATTTTAGG
TAGCGCCACACCATCGTTAGAATCCCGGGCTCGGGCGCAAAAAGATGTCTACCATCTGATTCGCCTGACGCAACGGGTGA
ACCAACAAGCCTTACCAGCTGTTGAACTAGTTGATATGCGCGAAGCGATGAGGGTTCAAAAAGCCAGCAACTTTTCACCG
GCGTTATTAGCCGGCATCAAAGAACGGATGCAAAAGGGCGAACAAAGTGTGTTACTCCTAAATCGTCGCGGTTTTTCATC
ATTTATCATGTGTCGGGATTGCGGGTTTGTCTTGCAGTGTCCCAACTGTGATATTTCGTTGACGTTACACATGGATACGC
ATTCGATGAAATGCCATTATTGTGGGCACGAAGAAGCCATTCCTAAGATTTGCCCCAGCTGTCAGAGTCGTCAAATTCGC
TATTTTGGGACTGGCACGCAAAAAGTCGAAGCTGAATTACAAGAATTAATCCCTGAAGCACGGATCTTGCGGATGGACGT
TGATACGACTCGGAAAAAAGGCGCGCATGCTAAATTATTGAAAAAATTTGGTGATCACGAAGCTGATATCTTATTAGGGA
CGCAGATGATTGCCAAGGGCCTAGATTTCCCAGATGTAACGTTAGTCGGGGTGATCAACGCTGATACTGCTTTGGGTTTA
CCGGATTTTCGGGCGAGTGAGCGGACTTTCCAATTATTAACGCAGGTTAGTGGTCGTGCGGGTCGTGCAGATAAGGTGGG
GCAAGTGATTGTTCAATCTTATAATCCCGAGAATTACGCGATTCAATTTGCCAAGCAGCACGATTATGAAGGCTTTTATC
AATATGAAATGGCGGTGCGCCACCGTGGCGGCTATCCGCCTTATTACTTTACGGTGAAGGTGACGGTTAGCCACCCTGAA
GAAGCACTTGCCGCAAAGAAGAGTTTTCAAATTGCCAAACAGATGCGACCGATTTTATCCGACCAAGCACTGATTCTCGG
GCCCACCCCGAAATCAATTGCTCGGATTAATAATCGTTATTTTTACCAAATTGTGATTAAATATAAACAGGAACCACAAC
TTCAGGCTAAATTAGCCGAAATACTAGAGACCACCCAAATCGATACTCGTCACGGGTTTAAGATTGGGCTGGATAATGAA
CCTCTACAATTTACTTAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (561-663)

• Type III restriction enzyme, res subunit (ResIII) (266-432)

• PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA) (520-545)

• Primosomal protein N C-terminal domain (PriA_C) (707-801)

• 3DNA-binding domain (3BD) (PriA_3primeBD) (6-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
priA	Bacillus subtilis subsp. subtilis str. 168	51.911	100	0.523