Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   A4W87_RS06200 Genome accession   NZ_CP017273
Coordinates   1223194..1225242 (-) Length   682 a.a.
NCBI ID   WP_056948552.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218194..1230242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS06180 (A4W87_06140) opp3b 1218648..1219583 (-) 936 WP_011374411.1 oligopeptide ABC transporter permease -
  A4W87_RS06185 (A4W87_06145) - 1219653..1221299 (-) 1647 WP_056948344.1 peptide ABC transporter substrate-binding protein -
  A4W87_RS06190 (A4W87_06150) acpP 1221772..1222014 (-) 243 WP_011374409.1 acyl carrier protein -
  A4W87_RS06195 (A4W87_06155) plsX 1222161..1223174 (-) 1014 WP_056948342.1 phosphate acyltransferase PlsX -
  A4W87_RS06200 (A4W87_06160) recG/mmsA 1223194..1225242 (-) 2049 WP_056948552.1 ATP-dependent DNA helicase RecG Machinery gene
  A4W87_RS06205 (A4W87_06165) - 1225562..1227229 (-) 1668 WP_056948340.1 DAK2 domain-containing protein -
  A4W87_RS06210 (A4W87_06170) - 1227293..1227655 (-) 363 WP_011374405.1 Asp23/Gls24 family envelope stress response protein -
  A4W87_RS06215 (A4W87_06175) rpmB 1227958..1228143 (+) 186 WP_004265581.1 50S ribosomal protein L28 -
  A4W87_RS06220 (A4W87_06180) - 1228496..1229146 (-) 651 WP_011374404.1 thiamine diphosphokinase -
  A4W87_RS06225 (A4W87_06185) rpe 1229133..1229795 (-) 663 WP_011374403.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 76031.56 Da        Isoelectric Point: 6.9395

>NTDB_id=167728 A4W87_RS06200 WP_056948552.1 1223194..1225242(-) (recG/mmsA) [Latilactobacillus sakei strain TMW 1.1396]
MSVLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKT
RLNVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKL
IREAFDNYQSVIPDLIPADIRERYKLVSEVELIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLAL
PYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAE
QHYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRMLR
EKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAES
EQMDLKNAEEIYATLAERFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGL
AQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFV
SLQVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=167728 A4W87_RS06200 WP_056948552.1 1223194..1225242(-) (recG/mmsA) [Latilactobacillus sakei strain TMW 1.1396]
CTGTCAGTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATT
AGGAATCGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAG
CGGTCGATCAGGAAAAGGTTACCTTAAAAGGAACCGTTGTTGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACA
CGGCTAAACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAACCAACCTTACTTGAAGGATAAATT
TGAAGCCGGTGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGG
TTCAATCGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAACGTGCGTCAAGGCACGCTCGTGAAATTG
ATTCGCGAAGCATTTGATAATTATCAAAGTGTCATTCCGGATTTGATTCCAGCTGATATTCGTGAGCGGTATAAATTAGT
TTCTGAAGTGGAACTGATTGCCGGAATGCATTTTCCGGAAAGCTATCCAGAAGCAAAGCAGGCTCGACGGACTGCTATTT
TCCACGAGTTTTTCTTGTATCAACTGCAGTTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTG
CCTTATCAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAA
CGAAATTTGTTTAGACCTTAAGGCACCGGCACATATGAATCGCCTTTTACAAGGGGATGTTGGGTCTGGGAAGACGATTG
TCGCGGCGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAA
CAACATTATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAA
GGAGCGCCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGCACGCACGCACTTATTCAAGATG
CCGTGGTTTACCATAAGTTAGGCTTTGCCGTCATTGATGAACAACATCGATTTGGGGTCAATCAACGGCGCATGCTACGT
GAAAAAGGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACTTTGGCGATTACCGCCTATGGCGA
AATGGATGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTG
AACAAGCGCTCTCGTTTGTTCAAAAACAATTAGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCG
GAACAAATGGATCTCAAAAATGCGGAAGAAATATACGCGACTTTGGCGGAGCGGTTTGAGCCGCAGTACCATGTGGCACT
ATTACATGGTAAGTTGAAGGATGATGAGAAAAACCGGATTATGACGGCTTTTTCAAATAACGAGATTCAACTACTGGTTT
CAACGACCGTTGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTTGATGCTGACCGGTTTGGCTTA
GCCCAACTTCATCAATTGCGTGGCCGGGTTGGTCGGGGTAAGAAAAAGGCCTACTGTCTATTGATTGCCGATCCTAAGAA
TCAACAAGGTGTAGATCGAATGACGATCATGACCGAAACGACCAACGGTTTTGTTGTTGCGCAAAAAGATTTGGAATTAC
GAGGCCCTGGTGAGGTCTTTGGCGATCGGCAATCGGGATTACCAGTCTTCAAGGTTGGTGATCCAGTCGCTGATTTTGTC
AGCTTACAGGTCGCACAACAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTT
AAAAGCGTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(259-416)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(600-673)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)

RecG wedge domain (RecG_wedge)

(14-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

98.827

0.507
  recG/mmsA Streptococcus pneumoniae R36A

51.335

98.827

0.507
  recG Bacillus subtilis subsp. subtilis str. 168

49.17

97.214

0.478