Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A4W87_RS02815 Genome accession   NZ_CP017273
Coordinates   564391..565023 (+) Length   210 a.a.
NCBI ID   WP_076632098.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 559391..570023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS02795 (A4W87_02770) udk 560504..561178 (+) 675 WP_226474417.1 uridine kinase -
  A4W87_RS02800 (A4W87_02775) greA 561200..561673 (+) 474 WP_011375067.1 transcription elongation factor GreA -
  A4W87_RS02805 (A4W87_02780) liaF 562570..563328 (+) 759 WP_076632100.1 cell wall-active antibiotics response protein LiaF -
  A4W87_RS02810 (A4W87_02785) - 563325..564389 (+) 1065 WP_076632099.1 sensor histidine kinase -
  A4W87_RS02815 (A4W87_02790) vraR 564391..565023 (+) 633 WP_076632098.1 response regulator transcription factor Regulator
  A4W87_RS02820 (A4W87_02795) - 565049..565342 (+) 294 WP_076632097.1 iron-sulfur cluster biosynthesis protein -
  A4W87_RS02825 (A4W87_02800) - 565540..566577 (+) 1038 WP_251932808.1 FtsX-like permease family protein -
  A4W87_RS02830 (A4W87_02805) - 566577..567245 (+) 669 WP_308216778.1 ABC transporter ATP-binding protein -
  A4W87_RS02835 (A4W87_02810) - 567321..567539 (+) 219 WP_076632095.1 CsbD family protein -
  A4W87_RS02840 (A4W87_02815) - 567596..568591 (-) 996 WP_076632094.1 YhdH/YhfP family quinone oxidoreductase -
  A4W87_RS02845 (A4W87_02820) - 568747..569838 (+) 1092 WP_076632117.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23317.87 Da        Isoelectric Point: 4.6711

>NTDB_id=167693 A4W87_RS02815 WP_076632098.1 564391..565023(+) (vraR) [Latilactobacillus sakei strain TMW 1.1396]
MIKVLIVDDHEMVRLGISTYLGVQDDLEVVDQAVNGQEGVEKALALRPDAILMDLVMPEMDGIEATKTILKAWPQAKIII
LTSFIDDEKVYPAIEAGAASYILKTSTAEEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNREREVLGLV
AKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQLAD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=167693 A4W87_RS02815 WP_076632098.1 564391..565023(+) (vraR) [Latilactobacillus sakei strain TMW 1.1396]
GTGATAAAAGTATTGATTGTAGATGACCATGAGATGGTTCGGTTGGGCATTTCAACCTATTTAGGGGTGCAAGACGATTT
AGAAGTGGTCGATCAAGCCGTTAACGGCCAAGAAGGCGTTGAAAAGGCCTTGGCACTACGGCCAGATGCGATTTTAATGG
ATCTCGTCATGCCTGAAATGGATGGGATTGAAGCCACTAAGACGATTCTAAAGGCTTGGCCTCAAGCCAAGATTATTATT
CTAACCAGCTTTATTGATGATGAAAAAGTCTACCCAGCAATCGAAGCTGGTGCAGCAAGTTACATATTAAAAACGTCGAC
GGCTGAAGAGATTGCCAATACGATTCGGAAGACAACTGCGGGGCAATCAGTTTTAGAACCCGAAGTCACTAACAAGATGA
TGAATCGCATGACGCATCAGGCAGAAACAAAGTTATACGAAGATTTAACGAATCGTGAACGAGAAGTCCTAGGTTTGGTT
GCCAAGGGCCGCAGTAATCAAGAAATTGCGGATGAATTATTTATCACGCTTAAAACGGTTAAGACGCATGTTTCCAATAT
TTTAGCGAAGTTACAAGTCGACGATCGGACGCAGGCCGCAATTTACGCCATCAAGCACCAATTAGCGGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

61.836

98.571

0.61
  degU Bacillus subtilis subsp. subtilis str. 168

36.986

100

0.386