Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL536_RS38875 Genome accession   NZ_CP014035
Coordinates   1807947..1809296 (-) Length   449 a.a.
NCBI ID   WP_104408513.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802947..1814296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS38840 (AL536_15975) moaE 1803651..1804106 (-) 456 WP_061056720.1 molybdopterin synthase catalytic subunit MoaE -
  AL536_RS38845 (AL536_15980) moaD 1804108..1804353 (-) 246 WP_061056721.1 molybdopterin synthase sulfur carrier subunit -
  AL536_RS38850 (AL536_15985) moaC 1804350..1804829 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL536_RS38855 (AL536_15990) moaB 1804839..1805351 (-) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  AL536_RS38860 (AL536_15995) moaA 1805423..1806412 (-) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  AL536_RS38865 (AL536_16000) - 1806723..1807613 (+) 891 WP_061056722.1 YvcK family protein -
  AL536_RS38870 (AL536_16005) luxU 1807602..1807940 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  AL536_RS38875 (AL536_16010) luxO 1807947..1809296 (-) 1350 WP_104408513.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL536_RS38880 (AL536_16015) uvrB 1809583..1811613 (-) 2031 WP_061056724.1 excinuclease ABC subunit UvrB -
  AL536_RS38890 (AL536_16025) - 1812455..1813684 (+) 1230 WP_061056725.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49985.18 Da        Isoelectric Point: 5.5480

>NTDB_id=167692 AL536_RS38875 WP_104408513.1 1807947..1809296(-) (luxO) [Vibrio fluvialis strain ATCC 33809]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTADTAV
EAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFITGESG
TGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDLQTK
LLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGYMSK
EEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREINLNMLPPPLNHPSENIISVPKVNAAPVSVHEIFPL
WMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=167692 AL536_RS38875 WP_104408513.1 1807947..1809296(-) (luxO) [Vibrio fluvialis strain ATCC 33809]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCAGATACAGCGGTT
GAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCACGGTAAACAATGC
GATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCGGGTAACCAGAATTACCAAGGCTTTATCGGCAGTAGTC
AAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACTGGAGAAAGCGGT
ACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCATTCATTGCGATTAACTGTGC
CGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAGCAACGGATCGCC
AGGGCGCTGCAGAATTGGCCGATGGCGGCACTCTGTTCCTTGATGAGCTGTGCGAAATGGATCTCGATCTGCAGACTAAA
TTGTTGCGCTTTATTCAGACCGGTACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGTGCGTTTTGTCTG
TGCGACCAACCGCGACCCATGGAAAGAAGTACAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTTTGTACGTCATTC
CACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTACTCGCTGCTGGGCTATATGTCGAAA
GAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTGGAACGTTTTAAACAATACGAATGGCCGGGTAATGTGCG
TCAACTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCAATCTGAATATGCTGCCACCACCGC
TCAATCATCCAAGCGAAAACATCATCAGTGTTCCGAAGGTTAACGCCGCGCCCGTATCGGTTCACGAAATCTTCCCGTTG
TGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGTGATGGCAATATTCCGCGTGCTGCCGGTTATCTGGA
CGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-104)

Bacterial regulatory protein, Fis family (HTH_8)

(400-438)

Sigma-54 interaction domain (Sigma54_activat)

(130-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.91

99.332

0.893
  pilR Pseudomonas aeruginosa PAK

38.565

99.332

0.383

Multiple sequence alignment