Detailed information NTG0167674

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A4W86_RS07665
• Genome accession: NZ_CP017272
• Coordinates: 1522382..1524547 (+)
• Length: 721 a.a.
• NCBI ID: WP_251950683.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.1239
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1517382..1529547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W86_RS07645 (A4W86_07585)	-	1519235..1519675 (-)	441	WP_011375153.1	CopY/TcrY family copper transport repressor	-
A4W86_RS07650 (A4W86_07590)	ptsP	1519824..1521551 (-)	1728	WP_234057540.1	phosphoenolpyruvate--protein phosphotransferase	-
A4W86_RS07655 (A4W86_07595)	-	1521548..1521814 (-)	267	WP_004265632.1	phosphocarrier protein HPr	-
A4W86_RS07660 (A4W86_07600)	-	1521957..1522148 (-)	192	WP_011375155.1	hypothetical protein	-
A4W86_RS07665 (A4W86_07605)	clpC	1522382..1524547 (+)	2166	WP_251950683.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
A4W86_RS07670 (A4W86_07610)	-	1524655..1524951 (+)	297	WP_011375157.1	DUF1827 family protein	-
A4W86_RS07675 (A4W86_07615)	-	1525076..1525498 (+)	423	WP_016265504.1	PPC domain-containing DNA-binding protein	-
A4W86_RS07680 (A4W86_07620)	-	1525705..1526790 (+)	1086	WP_016265505.1	MucBP domain-containing protein	-
A4W86_RS07685 (A4W86_07625)	-	1526903..1528480 (-)	1578	WP_011375160.1	peptide chain release factor 3	-

Sequence

Protein

• Length: 721 a.a.
• Molecular weight: 79768.12 Da
• Isoelectric Point: 5.0573

>NTDB_id=167674 A4W86_RS07665 WP_251950683.1 1522382..1524547(+) (clpC) [Latilactobacillus sakei strain TMW 1.1239]
MLCQNCQKNPATIHLYTSVNGQNQAINLCQNCYQALKQQGMSSQYNDPFGFSNLDELFNAINNPNAERNAANQGPQTQGG
RNGGGNNGQNGESLLSQFGVNLTNLAKSGQIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIADG
DVPAKLKDRQVIRLDVVSLVQGTGIRGQFEERMQQLITELKQNKQIILFIDEIHEIVGAGNAEGGMDAGNVLKPALARGE
LQLVGATTNNEFRQIEKDAALARRLQPVAVNEPSVDETVLILKGLQDKYESYHHVHYTDEALKAAAALSSRYIQDRYLPD
KAIDLLDEAGSKKNLTITLMDPKELEAKIKSAEAQKQEALKQEDYEKAATYRDQVTQLSEMKANNSVEKSQEPTITEKDM
EKIVEEKTHIPVGELKAQEQAQLKNLAQDLEARVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAK
QIAKELFGSTDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAHPDVMHMFLQILDD
GRLTDSQGRTVSFKDTIIIMTSNAGQTDAEANVGFGAAVAGQTHSILDQLTNYFKPEFLNRFDDIIEFQPLSKDNLLKIV
SLMLDQTNAMIADQGLHIAVTDDAKSKLVDLGYNPEMGARPLRRVIQEQIEDRVADYYLDHPEHKQLKAQLNDDQIQIVQ
G

Nucleotide

• Length: 2166 bp

>NTDB_id=167674 A4W86_RS07665 WP_251950683.1 1522382..1524547(+) (clpC) [Latilactobacillus sakei strain TMW 1.1239]
ATGCTTTGTCAAAATTGTCAAAAAAATCCAGCAACAATCCATCTCTACACTAGCGTCAATGGTCAAAACCAAGCCATTAA
CCTTTGTCAAAACTGTTATCAAGCACTAAAGCAACAAGGAATGAGTAGTCAATATAATGATCCCTTTGGTTTTAGTAATC
TTGATGAACTCTTCAATGCAATCAACAATCCAAACGCTGAACGTAATGCTGCTAACCAAGGTCCCCAAACACAAGGTGGC
CGTAATGGCGGCGGTAACAACGGTCAAAATGGCGAAAGCTTACTCAGCCAATTTGGTGTGAACCTCACCAACCTTGCTAA
GAGTGGTCAAATTGATCCGGTGATTGGTCGCGATAAGGAAATCGCGCGCGTCATCGAAATTCTCAATCGGCGCACCAAGA
ATAATCCAGTCTTAATTGGTGAAGCCGGCGTTGGTAAAACAGCCGTTGTCGAAGGTTTAGCGCAAAAAATTGCCGATGGC
GACGTTCCTGCTAAATTAAAGGATCGCCAAGTGATTCGCTTGGATGTCGTTTCATTAGTACAAGGGACTGGTATTCGCGG
TCAATTTGAAGAACGGATGCAACAGTTGATCACAGAGCTCAAACAAAATAAGCAAATTATCCTCTTTATCGATGAAATCC
ACGAAATCGTTGGCGCTGGCAATGCTGAAGGTGGCATGGACGCCGGTAATGTATTGAAACCCGCTCTTGCGCGTGGCGAA
TTACAACTCGTTGGCGCCACAACTAATAATGAATTCCGTCAGATTGAAAAAGACGCAGCCCTTGCACGTCGTCTTCAACC
GGTTGCGGTCAACGAACCATCTGTTGACGAAACCGTCCTAATTCTCAAAGGACTTCAAGATAAGTACGAAAGTTATCACC
ACGTTCACTATACGGACGAGGCGCTTAAAGCAGCAGCGGCCCTTTCTAGTCGTTATATCCAAGATCGTTATTTGCCTGAT
AAGGCTATCGACCTTTTGGATGAAGCAGGTTCTAAGAAAAACTTGACGATTACCTTGATGGATCCTAAGGAATTAGAAGC
CAAGATTAAATCTGCAGAAGCACAAAAACAAGAAGCCCTCAAGCAAGAAGATTACGAAAAAGCAGCTACTTATCGTGATC
AAGTCACACAGCTCTCTGAAATGAAAGCTAATAATTCAGTTGAAAAATCCCAAGAACCAACAATCACCGAAAAGGATATG
GAAAAAATTGTCGAAGAAAAAACCCATATTCCAGTTGGCGAATTAAAGGCGCAAGAACAAGCTCAACTTAAAAACTTAGC
GCAAGATCTTGAAGCACGTGTCATTGGTCAAGATACCGCAGTTGATAAAGTCGCTCGTTCAATTCGTCGTAGTCGAATTG
GCTTTAATAAATCCGGCCGACCAATTGGCTCCTTCCTCTTTGTTGGCCCAACCGGGGTTGGTAAAACGGAATTAGCCAAA
CAAATTGCCAAAGAACTCTTTGGCAGTACCGATGCGATGATTCGCTTTGATATGAGTGAATACATGGAGAAATTCAGTGT
GTCAAAATTGATTGGTTCACCTCCTGGCTACGTTGGTTACGAAGAAGCCGGGCAATTAACGGAACAAGTTCGTCGGAACC
CTTATAGTTTGATTCTTTTGGATGAAATCGAAAAGGCTCACCCTGACGTTATGCACATGTTCTTACAAATTCTAGATGAC
GGTCGTCTAACCGATTCACAAGGTCGGACTGTCAGCTTCAAAGACACAATCATTATCATGACGTCTAACGCTGGACAAAC
TGATGCTGAGGCTAACGTTGGTTTCGGTGCAGCTGTCGCTGGCCAAACCCATTCAATTCTCGATCAGTTAACGAACTACT
TTAAACCAGAATTCTTAAATCGTTTCGACGATATTATTGAATTCCAACCATTAAGTAAAGATAATCTATTAAAGATTGTC
AGCTTAATGCTTGATCAAACTAACGCGATGATTGCCGATCAAGGCCTCCACATTGCTGTGACGGATGACGCTAAATCTAA
ATTAGTCGATTTGGGCTACAACCCTGAAATGGGTGCTCGGCCACTACGTCGTGTCATTCAAGAACAAATTGAAGACCGCG
TTGCTGATTATTATTTAGATCATCCAGAACATAAGCAATTAAAAGCGCAGTTAAATGATGATCAGATTCAAATTGTGCAA
GGATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (631-702)

• AAA lid domain (AAA_lid_9) (274-372)

• ATPase family associated with various cellular activities (AAA) (AAA) (137-265)

• AAA domain (Cdc48 subfamily) (AAA_2) (460-625)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	67.442	100	0.684
clpE	Streptococcus mutans UA159	67.03	100	0.682
clpE	Streptococcus pneumoniae TIGR4	63.946	100	0.652
clpE	Streptococcus pneumoniae Rx1	63.946	100	0.652
clpE	Streptococcus pneumoniae D39	63.946	100	0.652
clpE	Streptococcus pneumoniae R6	63.946	100	0.652
clpC	Bacillus subtilis subsp. subtilis str. 168	51.502	92.372	0.476
clpC	Streptococcus thermophilus LMD-9	46.177	90.707	0.419
clpC	Streptococcus thermophilus LMG 18311	46.177	90.707	0.419
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.334	85.853	0.406
clpC	Streptococcus pneumoniae Rx1	47.557	85.16	0.405
clpC	Streptococcus pneumoniae D39	47.557	85.16	0.405
clpC	Streptococcus pneumoniae TIGR4	47.394	85.16	0.404
clpC	Streptococcus mutans UA159	47.231	85.16	0.402