Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   AL536_RS26925 Genome accession   NZ_CP014034
Coordinates   917293..919341 (-) Length   682 a.a.
NCBI ID   WP_020432686.1    Uniprot ID   A0AAX2LY86
Organism   Vibrio fluvialis strain ATCC 33809     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 912293..924341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS26910 (AL536_04205) clcA 913339..914736 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  AL536_RS26915 (AL536_04210) - 914901..915857 (+) 957 WP_061056082.1 TDT family transporter -
  AL536_RS26920 (AL536_04215) cqsA 916076..917257 (+) 1182 WP_061055705.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL536_RS26925 (AL536_04220) cqsS 917293..919341 (-) 2049 WP_020432686.1 hybrid sensor histidine kinase/response regulator Regulator
  AL536_RS26930 (AL536_04225) - 919480..922521 (-) 3042 WP_061055706.1 AAA family ATPase -
  AL536_RS26935 (AL536_04230) - 922525..923667 (-) 1143 WP_061055707.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79191.80 Da        Isoelectric Point: 5.3014

>NTDB_id=167675 AL536_RS26925 WP_020432686.1 917293..919341(-) (cqsS) [Vibrio fluvialis strain ATCC 33809]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDVAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=167675 AL536_RS26925 WP_020432686.1 917293..919341(-) (cqsS) [Vibrio fluvialis strain ATCC 33809]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGAAGCTTTTGTTCGTGTTTGT
TCGGTGGCATCGCGTTTCGTAATTCCGTGCCCAAATTATGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTCTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCCTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTATATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGGAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGAGCGGG
CATCGCGCATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ATAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGCGAAGTCGTTGACTACGCGTTGCATTCGTTCTCCTATAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGAGGACGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTTGCACTGTATAATTTGCTGAAAAACGCC
TTCTATTATCAGAACAGCGAGCAATTCCATATTGATGTGACCCTGAAAACCCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAATGGCGTAGGCATTGCGCCGGATCGCATCGACGATATTTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCGTCGGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAAGGATTAATGAGTCGCCATTTAAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATGTCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACCGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTGATCCTGATGG
ATATCGAAATGCCGTTTATCGATGGCATAGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCATACGGGCGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAACTGGCAAACTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591

Multiple sequence alignment