Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   A4W86_RS07725 Genome accession   NZ_CP017272
Coordinates   1535828..1536634 (-) Length   268 a.a.
NCBI ID   WP_016265510.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530828..1541634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS07700 (A4W86_07640) - 1531224..1531655 (+) 432 WP_025016066.1 GNAT family N-acetyltransferase -
  A4W86_RS07705 (A4W86_07645) - 1531731..1532204 (+) 474 WP_025016067.1 hypothetical protein -
  A4W86_RS07710 (A4W86_07650) - 1532346..1534046 (+) 1701 WP_229295523.1 glycosyltransferase family 8 protein -
  A4W86_RS07715 (A4W86_07655) - 1534115..1534651 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  A4W86_RS07720 (A4W86_07660) mutY 1534738..1535841 (-) 1104 WP_251950957.1 A/G-specific adenine glycosylase -
  A4W86_RS07725 (A4W86_07665) recX 1535828..1536634 (-) 807 WP_016265510.1 recombination regulator RecX Regulator
  A4W86_RS07730 (A4W86_07670) - 1536636..1536815 (-) 180 WP_011375169.1 hypothetical protein -
  A4W86_RS07735 (A4W86_07675) rlmD 1537203..1538594 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  A4W86_RS07740 (A4W86_07680) - 1538920..1539450 (-) 531 WP_251950691.1 DUF805 domain-containing protein -
  A4W86_RS07745 (A4W86_07685) - 1539541..1540011 (+) 471 WP_076645410.1 nucleoside 2-deoxyribosyltransferase -
  A4W86_RS07750 (A4W86_07690) - 1540098..1540340 (+) 243 WP_251950699.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31069.99 Da        Isoelectric Point: 6.0698

>NTDB_id=167675 A4W86_RS07725 WP_016265510.1 1535828..1536634(-) (recX) [Latilactobacillus sakei strain TMW 1.1239]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=167675 A4W86_RS07725 WP_016265510.1 1535828..1536634(-) (recX) [Latilactobacillus sakei strain TMW 1.1239]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAAGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTACCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369

Multiple sequence alignment