Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL475_RS10810 Genome accession   NZ_CP014033
Coordinates   610893..612254 (-) Length   453 a.a.
NCBI ID   WP_104966954.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 605893..617254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS10775 (AL475_02815) moaE 606597..607052 (-) 456 WP_061056720.1 molybdopterin synthase catalytic subunit MoaE -
  AL475_RS10780 (AL475_02820) moaD 607054..607299 (-) 246 WP_044365260.1 molybdopterin synthase sulfur carrier subunit -
  AL475_RS10785 (AL475_02825) moaC 607296..607775 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL475_RS10790 (AL475_02830) moaB 607785..608297 (-) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  AL475_RS10795 (AL475_02835) moaA 608369..609358 (-) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  AL475_RS10800 (AL475_02840) - 609669..610559 (+) 891 WP_061056722.1 YvcK family protein -
  AL475_RS10805 (AL475_02845) luxU 610548..610886 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  AL475_RS10810 (AL475_02850) luxO 610893..612254 (-) 1362 WP_104966954.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL475_RS10815 (AL475_02855) uvrB 612541..614571 (-) 2031 WP_061056724.1 excinuclease ABC subunit UvrB -
  AL475_RS10825 (AL475_02865) rsxA 615461..616042 (+) 582 WP_004726646.1 electron transport complex subunit RsxA -
  AL475_RS10830 (AL475_02870) rsxB 616042..616641 (+) 600 WP_020327943.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50379.61 Da        Isoelectric Point: 5.7071

>NTDB_id=167637 AL475_RS10810 WP_104966954.1 610893..612254(-) (luxO) [Vibrio fluvialis strain FDAARGOS_100]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREINLNMLPPPLNHPSENIISVPKVNAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=167637 AL475_RS10810 WP_104966954.1 610893..612254(-) (luxO) [Vibrio fluvialis strain FDAARGOS_100]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACAGCGGTTGAGGCAATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCGGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCATTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGATGGCGGCACTCTGTTCCTTGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGTACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGTGCGACCAACCGCGACCCATGGAAAGAAGTACAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTACTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTGGAACGTTTTAAACAATACGAATGGCC
GGGTAATGTGCGTCAACTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCAATCTGAATATGC
TGCCACCACCGCTCAATCATCCAAGCGAAAACATCATCAGTGTTCCGAAGGTTAACGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGTTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGTGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.807

98.455

0.894
  pilR Pseudomonas aeruginosa PAK

39.013

98.455

0.384

Multiple sequence alignment