Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   BHU02_RS03905 Genome accession   NZ_CP017271
Coordinates   764596..766644 (+) Length   682 a.a.
NCBI ID   WP_035148531.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 759596..771644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS03880 (BHU02_03810) rpe 759922..760584 (+) 663 WP_016264866.1 ribulose-phosphate 3-epimerase -
  BHU02_RS03885 (BHU02_03815) - 760571..761221 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  BHU02_RS03890 (BHU02_03820) rpmB 761570..761755 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  BHU02_RS03895 (BHU02_03825) - 762058..762420 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -
  BHU02_RS03900 (BHU02_03830) - 762484..764154 (+) 1671 WP_025015865.1 DAK2 domain-containing protein -
  BHU02_RS03905 (BHU02_03835) recG/mmsA 764596..766644 (+) 2049 WP_035148531.1 ATP-dependent DNA helicase RecG Machinery gene
  BHU02_RS03910 (BHU02_03840) plsX 766664..767677 (+) 1014 WP_016264871.1 phosphate acyltransferase PlsX -
  BHU02_RS03915 (BHU02_03845) - 767824..768039 (+) 216 WP_025015863.1 acyl carrier protein -
  BHU02_RS03920 (BHU02_03850) - 768512..770158 (+) 1647 WP_025015862.1 peptide ABC transporter substrate-binding protein -
  BHU02_RS03925 (BHU02_03855) opp3b 770228..771163 (+) 936 WP_011374411.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 75982.48 Da        Isoelectric Point: 7.1154

>NTDB_id=167556 BHU02_RS03905 WP_035148531.1 764596..766644(+) (recG/mmsA) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MSVLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKT
RLNVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSANKNVRQGTLVKL
IREAFDNYRNVIPDLIPADIRERYKLVSEVELIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLAL
PYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAE
QHYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLR
EKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAES
EQMDLKNAEEIYATLADRFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGL
AQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFA
SLQVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=167556 BHU02_RS03905 WP_035148531.1 764596..766644(+) (recG/mmsA) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
CTGTCAGTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATT
AGGAATCGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAG
CGGTCGATCAGGAAAAGGTCACCTTAAAAGGAACCGTTGTCGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACA
CGGCTAAACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAATCAACCCTACTTGAAGGATAAATT
TGAAGCAGGCGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGG
TTCAATCGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAGCCAATAAAAACGTGCGTCAAGGCACACTCGTAAAATTG
ATTCGCGAAGCGTTTGATAATTATCGCAATGTCATTCCGGATTTGATTCCGGCCGATATTCGCGAGCGGTATAAGTTAGT
TTCTGAAGTGGAACTGATTGCTGGAATGCATTTTCCGGAAAGCTACCCAGAAGCCAAGCAGGCGCGACGCACCGCCATTT
TTCATGAATTCTTCTTGTACCAACTGCAATTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTG
CCTTATCAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAA
CGAAATTTGTTTAGACCTTAAGGCACCGGCACATATGAACCGTCTTTTACAAGGGGATGTTGGGTCTGGGAAGACGATTG
TCGCGGCGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAA
CAACATTATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAA
GGAGCGCCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGAACGCACGCACTTATTCAAGATG
CCGTGGTTTACCACAAGTTAGGCTTTGCCGTCATCGATGAACAACATCGATTTGGGGTCAATCAACGGCGCGTGCTACGT
GAAAAAGGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACCTTGGCAATTACCGCCTATGGCGA
AATGGATGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTG
AACAAGCGCTCTCGTTTGTTCAAAAACAATTGGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCG
GAACAAATGGATCTCAAAAATGCGGAAGAAATCTACGCGACTTTGGCGGATCGGTTTGAGCCGCAGTACCATGTGGCGCT
ATTACACGGTAAGTTGAAGGATGACGAGAAAAACCGGATTATGACGGCTTTTTCAAATAACGAGATTCAACTACTGGTTT
CAACGACCGTCGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTCGATGCTGACCGGTTTGGCTTA
GCCCAACTTCATCAATTGCGTGGCCGGGTTGGTCGGGGCAAGAAAAAGGCCTACTGTCTATTGATTGCTGATCCTAAGAA
CCAACAAGGTGTTGATCGAATGACGATTATGACTGAAACGACCAACGGCTTTGTCGTCGCGCAAAAGGATTTAGAGTTGC
GAGGTCCCGGTGAGGTCTTTGGTGATCGCCAATCAGGATTACCAGTTTTCAAGGTTGGTGATCCAGTCGCTGATTTTGCC
AGTTTACAGGTCGCACAGCAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTT
AAAAGCGTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(600-673)

RecG wedge domain (RecG_wedge)

(14-164)

DEAD/DEAH box helicase (DEAD)

(259-416)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

98.827

0.507
  recG/mmsA Streptococcus pneumoniae R36A

51.335

98.827

0.507
  recG Bacillus subtilis subsp. subtilis str. 168

49.321

97.214

0.479