Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL499_RS11130 Genome accession   NZ_CP014022
Coordinates   2379875..2380276 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain FDAARGOS_141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2374875..2385276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL499_RS11115 (AL499_11120) - 2375329..2377083 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  AL499_RS11120 (AL499_11125) - 2377067..2378787 (+) 1721 Protein_2198 ABC transporter ATP-binding protein -
  AL499_RS12580 - 2378786..2378893 (+) 108 Protein_2199 IS200/IS605 family transposase -
  AL499_RS11125 (AL499_11130) - 2379233..2379685 (-) 453 WP_002461221.1 YwpF-like family protein -
  AL499_RS11130 (AL499_11135) ssb 2379875..2380276 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  AL499_RS11135 (AL499_11140) - 2380755..2381462 (+) 708 WP_002492081.1 transglycosylase family protein -
  AL499_RS11140 (AL499_11145) tenA 2381875..2382552 (+) 678 WP_002461217.1 thiaminase II -
  AL499_RS11145 (AL499_11150) thiD 2382557..2383378 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AL499_RS11150 (AL499_11155) thiM 2383371..2384159 (+) 789 WP_002492088.1 hydroxyethylthiazole kinase -
  AL499_RS11155 (AL499_11160) thiE 2384162..2384800 (+) 639 WP_002492090.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=167391 AL499_RS11130 WP_002461219.1 2379875..2380276(+) (ssb) [Staphylococcus lugdunensis strain FDAARGOS_141]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=167391 AL499_RS11130 WP_002461219.1 2379875..2380276(+) (ssb) [Staphylococcus lugdunensis strain FDAARGOS_141]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment