Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AL533_RS18960 Genome accession   NZ_CP014019
Coordinates   3953361..3954005 (+) Length   214 a.a.
NCBI ID   WP_006581060.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3948361..3959005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS18940 (AL533_18940) - 3948406..3948738 (+) 333 WP_002051722.1 hypothetical protein -
  AL533_RS18945 (AL533_18945) - 3948741..3949565 (+) 825 WP_100222400.1 putative RNA methyltransferase -
  AL533_RS18950 (AL533_18950) ponA 3949583..3952141 (-) 2559 WP_031982123.1 penicillin-binding protein PBP1a -
  AL533_RS18955 (AL533_18955) comM 3952303..3953361 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  AL533_RS18960 (AL533_18960) pilN 3953361..3954005 (+) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  AL533_RS18965 (AL533_18965) pilO 3954002..3954742 (+) 741 WP_016803752.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL533_RS18970 (AL533_18970) pilP 3954753..3955280 (+) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  AL533_RS18975 (AL533_18975) pilQ 3955343..3957508 (+) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  AL533_RS18980 (AL533_18980) aroK 3957520..3958089 (+) 570 WP_002051689.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24226.61 Da        Isoelectric Point: 6.0119

>NTDB_id=167323 AL533_RS18960 WP_006581060.1 3953361..3954005(+) (pilN) [Acinetobacter nosocomialis strain FDAARGOS_129]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=167323 AL533_RS18960 WP_006581060.1 3953361..3954005(+) (pilN) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
TGTGGTTGTTTTGGGAATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGAGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCGAAAGACACGGGGGCGGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678

Multiple sequence alignment