Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AL533_RS18975 Genome accession   NZ_CP014019
Coordinates   3955343..3957508 (+) Length   721 a.a.
NCBI ID   WP_004884727.1    Uniprot ID   A0A2L1VM20
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3950343..3962508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS18955 (AL533_18955) comM 3952303..3953361 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  AL533_RS18960 (AL533_18960) pilN 3953361..3954005 (+) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  AL533_RS18965 (AL533_18965) pilO 3954002..3954742 (+) 741 WP_016803752.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL533_RS18970 (AL533_18970) pilP 3954753..3955280 (+) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  AL533_RS18975 (AL533_18975) pilQ 3955343..3957508 (+) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  AL533_RS18980 (AL533_18980) aroK 3957520..3958089 (+) 570 WP_002051689.1 shikimate kinase AroK -
  AL533_RS18985 (AL533_18985) aroB 3958118..3959200 (+) 1083 WP_016803750.1 3-dehydroquinate synthase -
  AL533_RS18990 (AL533_18990) - 3959216..3960091 (+) 876 WP_104919225.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77838.18 Da        Isoelectric Point: 6.5404

>NTDB_id=167326 AL533_RS18975 WP_004884727.1 3955343..3957508(+) (pilQ) [Acinetobacter nosocomialis strain FDAARGOS_129]
MNQVFRQFSMGAVAVAIMQAASAQVSMTNIVPTQVAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSVQPNNKPVPVVTAQPQGISNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPAHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNKNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPIVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=167326 AL533_RS18975 WP_004884727.1 3955343..3957508(+) (pilQ) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTGTTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATAGTACCAACGCAAGTTGCAGGTCAGGGCACAGAAATTAGAGTTATGTTTAATGGATTGCCACCACAGCCAC
AGGCTTACCAACTTGAAAATCCGTCACGTTTAATATTAGATTTTGATAAAGCTCAACAAAGTTTAAAACAGTCTAAAATT
GCTGTTGCAACCAATGAAGCAAGCTCTGTAGATGTAACTTCAGATGATCAACGTTCACGTTTGACTGTAAATTTAAAAGA
TGCTGGAGCGTTTACAACACGTGTGGAAGGTAATACTTTTATTTTAAAAATTAATTCGGTCCAACCGAATAATAAACCTG
TACCAGTAGTTACTGCACAACCACAAGGTATTTCAAACATTGGATTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTGGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACTTTAGGTACAAA
AATTCCGGCACATTTGGCGCGTCGTCTAAATGTAAATGATTTTGCAACACCAGTCTCAAGTATTGATGCTTATAATGATA
AAGGTGCTGGTGTAATTACTATTCAGTCATCTGGTAGCTATGAATACATGGCATATCAGGCTGAAAATAAGCTCACAATC
AGTTTGAAACGACCACAAGATAAAAATGTAACTTCTTTATATAAAACGCCAAATTATTCTGGAAATAAGCTTTCGCTAGA
TTTTCAAGACATCGAAGTGCGCCGTGTTTTACAGCTCCTTGCTGATTTTACGGGAATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGTTTGAAAGATGTACCTTGGGATCAGGCTCTGGATATTATTTTAAAAACGAAAAATCTT
GATAAACGTCGTAATGGGAATGTGATTTGGATTGCTCCTGTTGCAGAGTTGATTAAAGCGGAAGAGGAAGAAGCGAAAGC
TGTGGCGCAAAGTGTAAAACTTGCTCCGTTACAGACAGAGTATATTCAACTTAAATACGCTAAAGCTGGCGATATTATGG
GTTTAATTACTCAAGGCTCAAATAATAGTAATGGCTTACAACATACTTCTGGTGGAGGAACTTCAACTTCAACCAATTTA
AATACTGGCGTTGATAGTCTTGGGAATAATGTGGGTAGTTTACTTAGCCCTCGCGGCACCATTACTCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCGATTGATCAAATTCGAAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTCATGGTTGAAGCACGTATTGTGAGAGCGTCTACGTCGTTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTT
TCGCAAGGTATTACCAATAATAAAAATTTGTTGGTTGGTGGTAGTGAAACAACTTTATGGAATCTGCGCGAACCTAAAAA
AGATGAAACTACAGGTGGCTATAAATATACGATTGAGCGCCCAGATAATTTAAACGTTGATTTGGGGGTTTCTAATCCTG
CCGGTAGTATTGCCTTTGGTCTTATTAGTATGTCGGACTTCATGTTGGATCTTGAGCTCTCAGCTTTACAAGCCGATGGT
TATGGTGAAGTAATTTCAACGCCTAAAGTGATGACCGCCGATAAGCAAACTGCGAAAGTAGCAACAGGTCAACAAGTTCC
ATATCAAACTACAACAAATTCTGCTGCAGGCTCAACAGCCACAACATCATTTAAAGATGCATTACTAAGCCTAAATGTAA
CTCCAAGTATTACGCCTGACGGTAAGATTCAAATGAAATTGGATATTTCTAAGGACTCTGTAGCAGGTGCGGCCCCAAAT
GGTGAATTAATTCTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAGACCGTTATTTTAGGTGGTGT
ATTCGAGCAAACAACGACGAATTCTCAAACCAAAGTTCCGTTTTTTGGTGATATTCCTATTGTAGGGCATTTATTTAGAA
AAGATGTAAAGTCTGATGATAAGCAAGAATTATTGATTTTCGTAACACCACGAATTGTTAATGACACTTTAGCTAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(38-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1VM20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

97.226

100

0.972
  pilQ Acinetobacter baumannii strain A118

97.087

100

0.971
  comQ Acinetobacter baylyi ADP1

75.104

100

0.753
  pilQ Pseudomonas aeruginosa PAK

39.702

100

0.406

Multiple sequence alignment