Detailed information NTG0167326

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: BHW76_RS09510
• Genome accession: NZ_CP017249
• Coordinates: 1899403..1899879 (-)
• Length: 158 a.a.
• NCBI ID: WP_001186192.1
• Uniprot ID: A0A0H3JIA8
• Organism: Escherichia coli strain NADC 5570/86-24/6565 isolate mutant
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1894403..1904879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHW76_RS09465 (BHW76_09465)	sbmC	1894895..1895368 (+)	474	WP_001105393.1	DNA gyrase inhibitor SbmC	-
BHW76_RS09470 (BHW76_09470)	yeeA	1895567..1896625 (+)	1059	WP_001202488.1	FUSC family protein	-
BHW76_RS09475 (BHW76_09475)	tmaR	1896797..1897126 (+)	330	WP_000450409.1	DUF496 family protein	-
BHW76_RS33145	-	1897227..1897409 (-)	183	WP_001016346.1	EutP/PduV family microcompartment system protein	-
BHW76_RS33150	-	1897472..1897609 (+)	138	Protein_1812	transposase domain-containing protein	-
BHW76_RS32130 (BHW76_09485)	-	1897898..1897990 (-)	93	Protein_1813	hypothetical protein	-
BHW76_RS09490 (BHW76_09490)	yeeW	1898024..1898218 (-)	195	WP_000988600.1	DUF5983 family protein	-
BHW76_RS09495 (BHW76_09495)	cbtA	1898215..1898588 (-)	374	Protein_1815	type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA	-
BHW76_RS09500 (BHW76_09500)	cbeA	1898677..1899045 (-)	369	WP_001285587.1	type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA	-
BHW76_RS09505 (BHW76_09505)	yeeT	1899119..1899340 (-)	222	WP_000692323.1	DUF987 domain-containing protein	-
BHW76_RS09510 (BHW76_09510)	radC	1899403..1899879 (-)	477	WP_001186192.1	JAB domain-containing protein	Machinery gene
BHW76_RS09515 (BHW76_09515)	-	1899894..1900373 (-)	480	WP_000860079.1	antirestriction protein	-
BHW76_RS09520 (BHW76_09520)	-	1900455..1901276 (-)	822	WP_001234544.1	DUF932 domain-containing protein	-
BHW76_RS09525 (BHW76_09525)	-	1901497..1901907 (-)	411	WP_000846711.1	hypothetical protein	-
BHW76_RS09530 (BHW76_09530)	-	1901923..1902606 (-)	684	WP_000775497.1	hypothetical protein	-
BHW76_RS09535 (BHW76_09535)	-	1902742..1903812 (-)	1071	WP_000102658.1	patatin-like phospholipase family protein	-
BHW76_RS09540 (BHW76_09540)	-	1903809..1904714 (-)	906	WP_000203545.1	diguanylate cyclase regulator RdcB family protein	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 17688.29 Da
• Isoelectric Point: 7.2020

>NTDB_id=167326 BHW76_RS09510 WP_001186192.1 1899403..1899879(-) (radC) [Escherichia coli strain NADC 5570/86-24/6565 isolate mutant]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide

• Length: 477 bp

>NTDB_id=167326 BHW76_RS09510 WP_001186192.1 1899403..1899879(-) (radC) [Escherichia coli strain NADC 5570/86-24/6565 isolate mutant]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (38-157)

3D structure

• AlphaFold DB: A0A0H3JIA8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	54.867	71.519	0.392