Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AL533_RS16260 Genome accession   NZ_CP014019
Coordinates   3386739..3388160 (+) Length   473 a.a.
NCBI ID   WP_083009365.1    Uniprot ID   A0A2L1VKZ8
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3381739..3393160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS16240 (AL533_16240) thrC 3381994..3383133 (+) 1140 WP_002048893.1 threonine synthase -
  AL533_RS16245 (AL533_16245) pbpG 3383242..3384288 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AL533_RS16250 (AL533_16250) - 3384500..3385135 (+) 636 WP_000633799.1 response regulator -
  AL533_RS16255 (AL533_16255) pilS 3385146..3386714 (+) 1569 WP_004710946.1 sensor histidine kinase Regulator
  AL533_RS16260 (AL533_16260) pilR 3386739..3388160 (+) 1422 WP_083009365.1 sigma-54-dependent transcriptional regulator Regulator
  AL533_RS16265 (AL533_16265) - 3388164..3389348 (-) 1185 WP_104919133.1 S41 family peptidase -
  AL533_RS16270 (AL533_16270) gpmI 3389364..3390911 (-) 1548 WP_104919134.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AL533_RS16275 (AL533_16275) lptG 3391037..3392107 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53169.40 Da        Isoelectric Point: 6.6690

>NTDB_id=167315 AL533_RS16260 WP_083009365.1 3386739..3388160(+) (pilR) [Acinetobacter nosocomialis strain FDAARGOS_129]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
LQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=167315 AL533_RS16260 WP_083009365.1 3386739..3388160(+) (pilR) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACAAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGTGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAATTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTATTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAGGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGCGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGAATCCATGTTATGGATCTCATGTTACCGCCTTTACGAGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACTGAGGCTGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCGCATTTGCACCCAGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTGCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAACGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1VKZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.715

100

0.947
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488

Multiple sequence alignment