Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL533_RS00260 Genome accession   NZ_CP014019
Coordinates   55625..56260 (-) Length   211 a.a.
NCBI ID   WP_004884597.1    Uniprot ID   K9BQS5
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50625..61260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS00225 (AL533_00225) mlaE 50954..51730 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AL533_RS00230 (AL533_00230) - 51730..52413 (+) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AL533_RS00235 (AL533_00235) - 52440..53081 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  AL533_RS00240 (AL533_00240) - 53093..53380 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  AL533_RS00245 (AL533_00245) - 53454..54467 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  AL533_RS00250 (AL533_00250) - 54625..55206 (+) 582 WP_104918599.1 TIGR00730 family Rossman fold protein -
  AL533_RS00255 (AL533_00255) - 55221..55622 (+) 402 WP_006582595.1 NUDIX hydrolase -
  AL533_RS00260 (AL533_00260) comF 55625..56260 (-) 636 WP_004884597.1 ComF family protein Machinery gene
  AL533_RS00265 (AL533_00265) recG 56253..58298 (-) 2046 WP_016804172.1 ATP-dependent DNA helicase RecG -
  AL533_RS00270 (AL533_00270) - 58319..59134 (+) 816 WP_006580703.1 NAD(P)H-binding protein -
  AL533_RS00275 (AL533_00275) - 59214..60200 (+) 987 WP_025465644.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24642.88 Da        Isoelectric Point: 9.9089

>NTDB_id=167289 AL533_RS00260 WP_004884597.1 55625..56260(-) (comF) [Acinetobacter nosocomialis strain FDAARGOS_129]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKIQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=167289 AL533_RS00260 WP_004884597.1 55625..56260(-) (comF) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGATACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9BQS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment