Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AWR26_RS16465 Genome accession   NZ_CP014007
Coordinates   3438797..3439417 (-) Length   206 a.a.
NCBI ID   WP_064567441.1    Uniprot ID   A0AA94H0Z7
Organism   Kosakonia oryzae strain Ola 51     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3433797..3444417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWR26_RS16450 (AWR26_16215) helD 3434033..3436087 (-) 2055 WP_064567435.1 DNA helicase IV -
  AWR26_RS16455 (AWR26_16220) - 3436210..3436656 (+) 447 WP_064567437.1 YccF domain-containing protein -
  AWR26_RS16460 (AWR26_16225) yccS 3436674..3438803 (+) 2130 WP_064567439.1 YccS family putative transporter -
  AWR26_RS16465 (AWR26_16230) sxy/tfoX 3438797..3439417 (-) 621 WP_064567441.1 TfoX/Sxy family DNA transformation protein Regulator
  AWR26_RS16470 (AWR26_16235) sulA 3439636..3440145 (+) 510 WP_064567443.1 SOS-induced cell division inhibitor SulA -
  AWR26_RS16475 (AWR26_16240) ompA 3440517..3441566 (+) 1050 WP_043954013.1 porin OmpA -
  AWR26_RS16480 (AWR26_16245) matP 3441644..3442096 (-) 453 WP_043954014.1 macrodomain Ter protein MatP -
  AWR26_RS16485 (AWR26_16250) - 3442279..3444039 (+) 1761 WP_064567445.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23579.24 Da        Isoelectric Point: 8.4866

>NTDB_id=167106 AWR26_RS16465 WP_064567441.1 3438797..3439417(-) (sxy/tfoX) [Kosakonia oryzae strain Ola 51]
MEDLSYQCIHQSCECLTSLGEIRHRAHFGGYSLSVDDTVFAMVAEGELYLRACEQSTQYAITHHAPLLIFNKRGREVSLN
YYFVDQALWNDRPMLLELSAYSLDAARREKVQRSARKRLRDLPNLTFQIETQLRDAGIMDIQTLRLLGAKASWLRLRKAN
RHLGVKILLALEGAIVGLHEAALPAQTRQELMEWFAIVMKKTANPH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=167106 AWR26_RS16465 WP_064567441.1 3438797..3439417(-) (sxy/tfoX) [Kosakonia oryzae strain Ola 51]
ATGGAAGACCTTTCTTATCAGTGTATACATCAATCATGTGAATGTCTGACATCGCTTGGCGAAATTCGTCACCGTGCTCA
TTTTGGCGGTTACAGCTTGTCGGTGGACGACACGGTTTTTGCGATGGTGGCCGAAGGAGAGCTTTACCTGCGGGCCTGTG
AACAAAGTACTCAATATGCAATAACGCACCATGCGCCACTTTTAATATTCAACAAACGAGGACGGGAGGTTTCGTTAAAT
TACTATTTTGTGGATCAGGCGTTATGGAACGATCGCCCTATGCTGCTGGAACTTTCGGCATATTCTCTCGATGCTGCCCG
GCGTGAAAAAGTGCAGCGCAGCGCCAGAAAACGTCTGCGCGATCTCCCTAATCTGACGTTCCAGATCGAAACGCAGCTTC
GTGATGCCGGAATTATGGATATACAGACGCTGCGTCTTCTTGGTGCTAAGGCCAGTTGGCTCAGGCTGCGGAAAGCGAAT
CGCCATCTGGGTGTGAAAATTCTTCTGGCGCTGGAAGGCGCTATCGTAGGATTGCACGAAGCGGCGCTCCCGGCGCAAAC
GCGCCAGGAACTGATGGAGTGGTTCGCTATTGTGATGAAGAAAACGGCCAATCCTCACTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

55.122

99.515

0.549

Multiple sequence alignment