Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   AWQ23_RS08395 Genome accession   NZ_CP013998
Coordinates   1743011..1746172 (-) Length   1053 a.a.
NCBI ID   WP_232309000.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 73109     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1738011..1751172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ23_RS08375 (AWQ23_08375) - 1738913..1740085 (+) 1173 WP_062434349.1 S-layer homology domain-containing protein -
  AWQ23_RS08380 (AWQ23_08380) hisF 1740075..1740857 (-) 783 WP_012307249.1 imidazole glycerol phosphate synthase subunit HisF -
  AWQ23_RS08385 (AWQ23_08385) - 1741063..1741359 (+) 297 WP_030006981.1 hypothetical protein -
  AWQ23_RS08390 (AWQ23_08390) - 1741356..1742948 (-) 1593 WP_062434352.1 SpoIID/LytB domain-containing protein -
  AWQ23_RS08395 (AWQ23_08395) pilL-C 1743011..1746172 (-) 3162 WP_232309000.1 hybrid sensor histidine kinase/response regulator Machinery gene
  AWQ23_RS08400 (AWQ23_08400) - 1746346..1747098 (+) 753 WP_062434355.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AWQ23_RS08405 (AWQ23_08405) - 1747254..1748492 (+) 1239 WP_062434357.1 GAF domain-containing sensor histidine kinase -
  AWQ23_RS08410 (AWQ23_08410) dapF 1748489..1749334 (-) 846 WP_062434360.1 diaminopimelate epimerase -
  AWQ23_RS08415 (AWQ23_08415) - 1749376..1749585 (+) 210 WP_062434363.1 Hfq-related RNA-binding protein -
  AWQ23_RS08420 (AWQ23_08420) - 1749658..1750572 (+) 915 WP_062434366.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 1053 a.a.        Molecular weight: 116621.93 Da        Isoelectric Point: 4.4795

>NTDB_id=167065 AWQ23_RS08395 WP_232309000.1 1743011..1746172(-) (pilL-C) [Picosynechococcus sp. PCC 73109]
MGAPVSNNSHNEAHNYQDSEFEDELLELFEDLDAETSAPPATDFPKEIDPKVSFISFANNFEELLAFEEVTSPQSQTPLQ
ASSQNEADLEADLEALLQDTDPNQPSETETYATESEPYFPLEDPVSPPIKRPKAISSQISPVTNGQITYYPPLEDLGQYL
EVSSSSSANSVDWQALTQLIEQTPSAPSPSPSPKKRPQIAISKQTDFGELEALLQQADTMGGPPITTTSGPSTNRQRSQK
VNSFEQTMRIPVKQLDNLSNLMGELVVNRNTLEQSQEKLRQFLDNLTGQVQRLNDIGSQMQDLYERSLLERSLLASRGQS
SEYHFPPGFTDKADAPGRHRSQEYDPLEMDQFTGFHLLSQEMIELIVRVRESSSDIEFLVDDNEQVARNLRQVSTQLQEG
LTKSRMIPFAQAADRLVRPVREISLKLNKRASLNVEGREVLIDKMILEQLYDPLTHLINNAITHGIESPEVRLSKGKPAA
GVVSLKAYIQGNQIVIAIADDGAGMDSEALVHKALEKNLITPDQLSDLSQQDIYDFIFHPGFTTKAQADDFSGRGVGMDV
VRTALGSIRGTITIDSALGKGTTFTIRLPLTLNICRALFCLNRHARIALPMDGVEDMQTYTLDQVEQEGRRRYIRWRDSR
LRVYPLSNLLTLQRQIGRGSIYGGVGDPDQIPVVILRSAGNLLAIQVDQVLGEQEIVIKQIEGPIPKPAAIAGATVLGDG
TVMPVVDVLELIELAAQGRVRAKATTWQDNPALHLLVPEMVQTEPIVLIVDDSITVRELLSMSFTKAGYRVEQARDGQEA
WEKLRGGLPCELVFCDIEMPRMDGLELLSRIQKDPNLEKIPVAMLTSRGADRHRQMAAELGASAYFTKPYLEEVLLDAAQ
KMRQGDVLLPGSTKQPTVSEPGDGMGDFEPLDDASVKITAPRILIVDDSVTVRELLAITFQKAGYHVERARDGEEALEQL
LENPDFSLVFCDIEMPRLDGLALLEEIQQYPELAHIPIAMLTSRGAGRHRKIAADRGAKAYFTKPYVEDHLLEAAARLMA
GEILLDENGKVVA

Nucleotide


Download         Length: 3162 bp        

>NTDB_id=167065 AWQ23_RS08395 WP_232309000.1 1743011..1746172(-) (pilL-C) [Picosynechococcus sp. PCC 73109]
ATGGGGGCACCAGTGAGCAACAACAGTCATAATGAAGCGCATAACTATCAAGATTCTGAGTTTGAAGACGAACTCCTAGA
ACTGTTTGAAGACCTCGACGCAGAAACCTCTGCCCCCCCAGCGACCGATTTTCCCAAGGAGATCGATCCGAAAGTTTCAT
TTATCAGCTTCGCAAATAACTTTGAAGAACTTTTAGCCTTCGAGGAAGTGACCTCCCCCCAGTCCCAAACGCCTCTGCAA
GCCTCGTCCCAAAACGAAGCAGACCTCGAAGCCGATTTAGAAGCTCTCCTCCAAGATACTGATCCCAACCAACCCTCCGA
AACAGAAACTTACGCCACCGAGAGCGAACCTTATTTTCCCCTCGAAGACCCCGTTTCCCCGCCCATCAAACGCCCCAAGG
CCATTTCCTCCCAGATCTCCCCGGTCACCAACGGTCAGATCACCTACTACCCTCCCCTAGAGGATCTCGGTCAATACCTA
GAAGTGTCATCAAGCTCGTCGGCCAACTCTGTTGACTGGCAAGCCCTCACTCAACTCATTGAACAAACTCCGAGCGCTCC
TAGCCCTAGTCCCTCCCCCAAAAAACGCCCCCAAATTGCCATTTCCAAACAGACGGACTTTGGTGAATTAGAAGCCCTGC
TCCAACAAGCAGACACCATGGGAGGGCCTCCCATTACTACCACCAGCGGCCCTAGTACAAATCGTCAACGCTCCCAAAAG
GTCAACAGCTTTGAGCAGACCATGCGGATTCCCGTCAAGCAACTCGATAACCTCAGTAACTTGATGGGAGAACTCGTTGT
CAACCGCAATACCCTCGAACAAAGCCAAGAAAAACTCCGGCAATTCCTCGATAATCTCACGGGCCAAGTGCAACGGCTCA
ATGACATTGGTAGCCAGATGCAAGATCTTTATGAACGTTCTCTCCTGGAGCGTTCCCTGCTGGCCAGTCGTGGTCAAAGT
AGTGAATATCACTTTCCCCCAGGTTTCACCGATAAGGCGGATGCCCCCGGTCGCCATCGTTCCCAAGAATATGACCCCCT
AGAAATGGATCAGTTCACCGGCTTTCACCTCCTCTCCCAGGAGATGATTGAACTGATTGTGCGGGTGCGAGAATCTTCTT
CGGATATCGAATTTCTAGTCGATGACAATGAACAAGTTGCCCGTAATCTCCGGCAGGTCAGTACGCAGCTCCAGGAAGGC
TTGACTAAATCACGGATGATTCCCTTCGCCCAAGCAGCCGATCGCCTGGTGCGCCCCGTCCGAGAAATTTCCCTCAAACT
CAATAAGCGAGCCTCCCTCAATGTCGAAGGTCGAGAAGTGCTCATTGATAAAATGATCCTAGAGCAGCTCTATGATCCCC
TGACTCACCTGATCAACAACGCCATTACCCATGGGATCGAGTCCCCGGAAGTACGCCTCAGTAAGGGTAAGCCTGCGGCG
GGGGTTGTCTCCCTCAAAGCCTATATTCAGGGGAATCAAATTGTGATTGCCATTGCCGATGATGGTGCGGGGATGGATTC
TGAAGCCCTCGTCCACAAAGCCCTCGAAAAAAACCTGATTACCCCTGATCAATTATCGGATCTCAGTCAACAGGATATTT
ATGATTTTATTTTCCATCCTGGCTTTACCACCAAGGCGCAGGCCGATGACTTTTCTGGTCGGGGGGTTGGCATGGATGTG
GTCCGCACGGCCCTCGGTAGTATTCGAGGCACGATTACCATTGACTCCGCCCTGGGTAAAGGTACAACGTTTACCATCCG
GCTACCTCTCACCCTTAATATCTGCCGCGCTTTATTTTGTCTCAATCGCCACGCCCGCATTGCTCTGCCCATGGATGGGG
TTGAAGATATGCAGACCTACACCCTCGACCAAGTGGAACAGGAAGGCCGCAGACGTTATATTCGCTGGCGAGATTCTCGA
TTGCGGGTGTATCCCCTCAGTAATCTATTGACGCTCCAACGACAAATTGGGCGGGGCTCAATTTATGGAGGAGTTGGGGA
TCCTGACCAAATTCCCGTTGTGATCCTGCGCAGTGCGGGAAATCTCCTGGCGATTCAGGTGGATCAGGTGCTAGGGGAAC
AGGAAATCGTGATTAAACAGATCGAGGGACCGATTCCGAAACCAGCGGCGATCGCCGGGGCGACAGTCCTGGGGGATGGC
ACGGTCATGCCTGTGGTTGATGTGTTAGAGCTGATTGAACTTGCGGCCCAGGGACGGGTCAGGGCCAAGGCTACCACCTG
GCAAGATAACCCGGCCTTACACTTGCTCGTGCCAGAGATGGTACAAACAGAACCCATTGTGTTGATTGTGGATGATTCGA
TCACAGTGCGCGAACTCCTCTCGATGAGTTTCACAAAGGCTGGCTATCGGGTTGAGCAGGCCCGGGACGGCCAGGAAGCT
TGGGAAAAACTGCGGGGAGGCTTACCCTGTGAACTGGTCTTTTGCGATATTGAGATGCCGCGCATGGATGGCTTGGAGCT
ATTATCTCGCATTCAAAAAGACCCGAATTTAGAAAAAATTCCGGTGGCCATGCTGACATCAAGGGGGGCCGATCGCCACC
GACAAATGGCCGCTGAACTGGGGGCGAGTGCCTATTTCACGAAACCCTATTTGGAAGAAGTGCTGTTGGATGCGGCCCAA
AAAATGCGCCAAGGGGACGTGTTACTGCCGGGCAGTACGAAACAGCCCACGGTCTCGGAGCCTGGGGACGGGATGGGTGA
TTTTGAACCCCTAGATGATGCGTCGGTAAAAATAACGGCCCCAAGGATTTTGATTGTGGATGATTCGGTGACGGTGCGAG
AATTGTTAGCCATTACCTTCCAAAAGGCAGGCTACCATGTGGAGCGGGCCCGGGATGGTGAAGAGGCTCTAGAGCAGTTG
TTGGAAAATCCCGATTTTAGTTTGGTGTTCTGTGATATTGAGATGCCGCGTCTAGATGGTTTAGCGTTGCTCGAAGAAAT
TCAACAATATCCTGAATTAGCCCATATTCCCATTGCGATGTTGACCTCGCGCGGGGCCGGACGACATCGGAAAATTGCGG
CGGACCGGGGGGCAAAGGCCTATTTTACAAAGCCCTATGTGGAAGATCATTTGCTAGAAGCAGCGGCCCGGTTAATGGCT
GGGGAAATTTTACTGGACGAAAATGGTAAGGTGGTGGCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(923-1034)

Response regulator receiver domain (Response_reg)

(767-878)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(246-302)

CheW-like domain (CheW)

(599-733)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(452-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

53.614

94.587

0.507

Multiple sequence alignment