Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWQ23_RS05050 Genome accession   NZ_CP013998
Coordinates   1038907..1040328 (-) Length   473 a.a.
NCBI ID   WP_062433174.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 73109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1033907..1045328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ23_RS05030 (AWQ23_05030) - 1035081..1035554 (+) 474 WP_062433167.1 low molecular weight protein-tyrosine-phosphatase -
  AWQ23_RS05035 (AWQ23_05035) - 1035587..1036549 (+) 963 WP_083500688.1 CAP domain-containing protein -
  AWQ23_RS05040 (AWQ23_05040) btpA 1036668..1037501 (-) 834 WP_012306602.1 photosystem I biogenesis protein BtpA -
  AWQ23_RS05045 (AWQ23_05045) - 1037739..1038716 (+) 978 WP_062433171.1 cysteine synthase A -
  AWQ23_RS05050 (AWQ23_05050) radA 1038907..1040328 (-) 1422 WP_062433174.1 DNA repair protein RadA Machinery gene
  AWQ23_RS05055 (AWQ23_05055) rpaB 1040550..1041278 (+) 729 WP_012306606.1 response regulator transcription factor RpaB -
  AWQ23_RS05060 (AWQ23_05060) recJ 1041442..1043442 (+) 2001 WP_062433177.1 single-stranded-DNA-specific exonuclease RecJ -
  AWQ23_RS05065 (AWQ23_05065) psb30 1043513..1043644 (-) 132 WP_012306608.1 photosystem II reaction center protein Ycf12/Psb30 -
  AWQ23_RS05070 (AWQ23_05070) - 1043795..1044154 (+) 360 WP_062433181.1 YkgJ family cysteine cluster protein -
  AWQ23_RS16165 - 1044327..1044467 (-) 141 WP_168191139.1 hypothetical protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 51000.55 Da        Isoelectric Point: 6.8992

>NTDB_id=167059 AWQ23_RS05050 WP_062433174.1 1038907..1040328(-) (radA) [Picosynechococcus sp. PCC 73109]
MAKAKTVYVCRECGAEARQWLGKCPDCGVYGSLQEEIREKESSTGVSRTWHHKPKTTRKAASPVSRTAVKFTDIDTRQRM
RFGSGFGELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVAYQLSTSLPRILYVSAEESGQQIKLRGDRLRDAAHPPEEN
LYVLTETGLETILAELETLQPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEGAIAGP
RVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSELFLGNREEATPGTATVVACEGTRPL
LVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAIALVASFRDRLV
SPQTVLIGEVGLGGQIRPVSHLETRLKEAMKLGFTRAIVPKGQKLPDGLDLDIIPVARVLDAIVAALPADGKE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=167059 AWQ23_RS05050 WP_062433174.1 1038907..1040328(-) (radA) [Picosynechococcus sp. PCC 73109]
ATGGCTAAGGCAAAAACGGTTTATGTGTGTCGTGAATGTGGGGCAGAGGCGCGGCAATGGCTCGGTAAATGCCCAGATTG
TGGGGTCTATGGGTCGCTGCAAGAAGAGATCCGCGAAAAGGAAAGCAGTACTGGTGTGAGTCGTACCTGGCACCATAAGC
CGAAAACAACCAGAAAAGCCGCCAGCCCAGTCTCTCGCACTGCGGTGAAATTTACAGATATTGATACCCGCCAACGGATG
CGCTTTGGGTCTGGGTTTGGGGAGCTAGACCGGGTGCTTGGCGGAGGGTTAGTCCCAGGTTCCTTGGTGCTAATTGGGGG
CGATCCGGGCATTGGGAAATCAACTTTGTTACTCCAGGTGGCCTATCAACTCAGCACAAGTTTACCAAGAATTTTGTATG
TGTCGGCGGAGGAATCGGGCCAGCAAATCAAGCTCCGGGGCGATCGCCTCCGGGATGCAGCCCACCCCCCAGAAGAAAAT
TTATATGTACTAACGGAAACGGGCCTCGAAACGATTTTGGCCGAACTAGAAACTCTCCAGCCCCAGGTGGCAGTGATCGA
TAGTATTCAGACCTTGTACTATTCCGCCTTGGGTTCGGCCCCCGGTTCGGTGTCCCAGGTGCGGGAATGTACCTCGGCTT
TGATGCAAGTAGCGAAGCGGGAAAACATTACGCTGTTTATCGTCGGTCATGTCACCAAGGAAGGGGCGATCGCCGGGCCA
CGGGTTTTGGAACACCTCGTTGATACGGTGCTGTATTTCGAGGGAGATAGATATGCCTCCCATCGGTTGTTGCGGTCGGT
GAAAAATCGCTTTGGGGCCACCCATGAAGTCGGCATTTTTGAGATGGGTGAACAGGGTTTAGAGGAAGTGCTCAATCCTT
CAGAACTTTTCCTCGGTAACCGCGAAGAGGCCACCCCCGGTACCGCCACCGTTGTCGCTTGTGAAGGCACCCGACCCCTT
TTAGTAGAATTGCAAGCCCTAGTCAGTCCCACCAGTTATTCTTCCCCTCGGCGTTCCACCACAGGCGTTGATTATTCCCG
TCTCCAGCAAATTTTGGCGGTGTTAGAAAAGCGAGTGGGCATTCCCCTTTCTAAGTTAGATGCCTATGTGGCTTCGGCGG
GCGGTCTGACAGTTTCTGAACCAGCGGTTGACCTGGGGATTGCCATTGCTTTGGTCGCTAGTTTCCGCGATCGCCTTGTT
TCACCCCAGACTGTGCTGATCGGAGAAGTAGGCTTAGGAGGACAAATTCGACCTGTTTCTCACTTGGAAACCCGTCTCAA
GGAAGCAATGAAATTAGGCTTTACCCGTGCCATTGTGCCCAAAGGTCAAAAGTTACCAGACGGTTTAGACCTCGATATTA
TTCCCGTGGCTCGCGTGCTGGATGCTATCGTCGCCGCCCTGCCTGCCGATGGCAAAGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(378-441)

AAA domain (AAA_25)

(92-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.442

99.577

0.522
  radA Streptococcus pneumoniae Rx1

48.298

99.366

0.48
  radA Streptococcus pneumoniae D39

48.298

99.366

0.48
  radA Streptococcus pneumoniae R6

48.298

99.366

0.48
  radA Streptococcus pneumoniae TIGR4

48.298

99.366

0.48
  radA Streptococcus mitis SK321

50

93.446

0.467
  radA Streptococcus mitis NCTC 12261

49.774

93.446

0.465

Multiple sequence alignment