Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   APT61_RS14760 Genome accession   NZ_CP013990
Coordinates   3146764..3147390 (-) Length   208 a.a.
NCBI ID   WP_059308343.1    Uniprot ID   A0A9X3YCJ6
Organism   Leclercia adecarboxylata strain USDA-ARS-USMARC-60222     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141764..3152390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT61_RS14745 (APT61_14745) helD 3142001..3144055 (-) 2055 WP_059308341.1 DNA helicase IV -
  APT61_RS14750 (APT61_14750) - 3144179..3144625 (+) 447 WP_032617407.1 YccF domain-containing protein -
  APT61_RS14755 (APT61_14755) yccS 3144644..3146779 (+) 2136 WP_059308342.1 YccS family putative transporter -
  APT61_RS14760 (APT61_14760) sxy/tfoX 3146764..3147390 (-) 627 WP_059308343.1 TfoX/Sxy family DNA transformation protein Regulator
  APT61_RS14765 (APT61_14765) sulA 3147608..3148117 (+) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  APT61_RS14770 (APT61_14770) ompA 3148472..3149527 (+) 1056 WP_103792031.1 porin OmpA -
  APT61_RS14775 (APT61_14775) matP 3149594..3150049 (-) 456 WP_032617400.1 macrodomain Ter protein MatP -
  APT61_RS14780 (APT61_14780) - 3150236..3151996 (+) 1761 WP_059308345.1 AAA family ATPase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23878.43 Da        Isoelectric Point: 9.1279

>NTDB_id=166955 APT61_RS14760 WP_059308343.1 3146764..3147390(-) (sxy/tfoX) [Leclercia adecarboxylata strain USDA-ARS-USMARC-60222]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPELRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=166955 APT61_RS14760 WP_059308343.1 3146764..3147390(-) (sxy/tfoX) [Leclercia adecarboxylata strain USDA-ARS-USMARC-60222]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACCTCTTATCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCACTTGAAGCCGCGCG
GCGGGAACGTCGCGAGCGGTACAAACGCGACAGGCTGAAAGATTTACCCAATCTCAATTTTCAGCTTGAGATTCTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTAAAGATCAGAGCGCTTAAC
AAGCACCTGAGTTACAAAGTGCTGTTTGCGCTAGAGGGGGCAATAGTGGGGCTGCATGAAGCAGCGCTCCCGGAGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTACCGGTAGAGAACAGTCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567

Multiple sequence alignment