Detailed information NTG0166870

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: APT59_RS16510
• Genome accession: NZ_CP013987
• Coordinates: 3616584..3618824 (-)
• Length: 746 a.a.
• NCBI ID: WP_059315848.1
• Uniprot ID: A0A0U4P5T2
• Organism: Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3611584..3623824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APT59_RS16475 (APT59_16475)	murB	3612012..3613034 (-)	1023	WP_059315842.1	UDP-N-acetylmuramate dehydrogenase	-
APT59_RS16480 (APT59_16480)	-	3613024..3613491 (-)	468	WP_174523171.1	low molecular weight protein-tyrosine-phosphatase	-
APT59_RS16485 (APT59_16485)	kdsB	3613498..3614262 (-)	765	WP_059315844.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
APT59_RS16490 (APT59_16490)	-	3614259..3614444 (-)	186	WP_059232294.1	Trm112 family protein	-
APT59_RS16495 (APT59_16495)	lpxK	3614459..3615466 (-)	1008	WP_059315845.1	tetraacyldisaccharide 4'-kinase	-
APT59_RS16500 (APT59_16500)	-	3615463..3615903 (-)	441	WP_059315846.1	ExbD/TolR family protein	-
APT59_RS16505 (APT59_16505)	exbB	3615900..3616535 (-)	636	WP_059315847.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
APT59_RS16510 (APT59_16510)	comA	3616584..3618824 (-)	2241	WP_059315848.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
APT59_RS16515 (APT59_16515)	-	3618936..3620177 (-)	1242	WP_059315849.1	lipoprotein-releasing ABC transporter permease subunit	-
APT59_RS16520 (APT59_16520)	lolD	3620185..3620886 (-)	702	WP_026083696.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
APT59_RS16525 (APT59_16525)	-	3620879..3622129 (-)	1251	WP_059315850.1	lipoprotein-releasing ABC transporter permease subunit	-
APT59_RS16530 (APT59_16530)	-	3622237..3622788 (+)	552	WP_059315851.1	PilZ domain-containing protein	-
APT59_RS16535 (APT59_16535)	-	3622785..3623075 (+)	291	WP_059315852.1	hypothetical protein	-
APT59_RS16540 (APT59_16540)	-	3623091..3623807 (+)	717	WP_059315853.1	glycerophosphodiester phosphodiesterase	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 78848.09 Da
• Isoelectric Point: 9.3785

>NTDB_id=166870 APT59_RS16510 WP_059315848.1 3616584..3618824(-) (comA) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
MRAALLAFALDVLLLRAFAALPSLPLLAALASVAIVLLGTRFFVLGACGLGLAWALLAAHGALADRLDPALEQRVLWIEG
QVSGLPAVDADSVGFVLSGATSRRDVKLPAHIRLNWHGGPRLLTGERWRLAAELRGPAGLVNALGQDREAWLLAQGIGAT
GSVKDGQRLQSASGLATWRDGIRQYLQTRDPAGQGGLLAALVVGDGSGISDRQWQLFQDTGTVHLMVISGQHIGLIALGV
YAGVVILARRGYWPSRLPWRLSAAVLTVATALGYGLLAGFEVPVQRACVMVTLGLLWQLGRQQVRLADAVLLALVLVLAA
NPLVSLLPGFWLSFGAVLLLLWSFAGRLGQLPWWVTLGRAQWCMALGLAPLLLALGLPLSLSGPLANAVAVPLMDMAVVP
LALVGTLLSLLWSPLGDPALLLAGGLLQGLLWLLSGLAHLAAAWQPVLAPAWALWLAGLGALLALLPAGVPLRGFGALLM
LPGLFPLAPVPAEGLARITLLDVGQGLAVLVRTRQHALLYDAGPRQGSYDSGARVVLPNVKAAGIGALDIMLLSHADADH
AGGAPAVARGLPAGRVLSGEAGRLKPELHAQDCADGAHWQWNEVAFTTWWHPDADSNASSCVLSVEARGERLLLTGDIDA
RREGQLVASGVPLAADWLVAPHHGSRSGSSAAFIDAVQPRGVLISRGLNNRYGHPHPQVMQRYRERGVIPYDTAELGALS
WTLGRWEAPHGQRLERHWWRIPSPTP

Nucleotide

• Length: 2241 bp

>NTDB_id=166870 APT59_RS16510 WP_059315848.1 3616584..3618824(-) (comA) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
ATGCGTGCCGCTCTGCTTGCCTTCGCCTTGGATGTGCTGCTCCTGCGCGCCTTTGCCGCGCTACCGTCACTGCCCCTGCT
GGCGGCTCTCGCCTCGGTCGCCATCGTGCTGCTGGGCACCCGTTTCTTCGTGCTCGGCGCCTGCGGGCTCGGCCTGGCCT
GGGCACTGCTCGCTGCGCACGGGGCCCTGGCGGATCGCCTGGATCCGGCGCTGGAGCAGCGGGTATTGTGGATCGAGGGC
CAGGTGAGCGGGCTGCCCGCGGTGGATGCCGACTCGGTGGGCTTCGTGCTCAGTGGCGCGACCAGTCGCCGCGACGTCAA
ACTGCCCGCGCACATCCGCCTGAACTGGCACGGCGGTCCTCGCCTCCTGACCGGCGAGCGCTGGCGCCTGGCGGCGGAGC
TACGCGGACCGGCAGGTCTGGTCAACGCCCTGGGCCAGGACCGCGAGGCCTGGCTGCTGGCCCAGGGCATAGGGGCTACC
GGTAGCGTGAAGGATGGCCAGCGGCTGCAGTCCGCCAGTGGCCTGGCAACCTGGCGCGATGGTATCCGCCAATACCTGCA
GACCCGGGATCCGGCCGGGCAGGGCGGATTGCTCGCCGCGTTGGTGGTGGGCGACGGCTCGGGGATCAGCGACCGCCAAT
GGCAGCTGTTCCAGGACACCGGCACGGTGCACCTCATGGTGATTTCCGGGCAGCACATCGGCCTGATCGCCCTGGGCGTC
TATGCCGGGGTGGTCATCCTGGCGCGCCGTGGCTACTGGCCGAGTCGACTCCCCTGGCGGCTATCCGCCGCCGTGCTGAC
CGTGGCCACCGCGCTGGGTTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTGCAGCGCGCCTGCGTCATGGTTACCCTGG
GCTTGCTTTGGCAGCTGGGGCGCCAGCAGGTCCGGCTGGCTGATGCCGTACTGCTGGCCCTGGTGCTGGTCCTGGCGGCC
AATCCCCTGGTCAGCCTGCTGCCTGGCTTCTGGTTGTCCTTTGGCGCCGTGCTGTTGCTGCTGTGGAGCTTCGCGGGTCG
TCTGGGACAGCTGCCCTGGTGGGTCACCCTGGGACGGGCCCAATGGTGCATGGCCCTGGGCCTGGCACCGCTGCTGCTGG
CGCTGGGCCTGCCACTGAGCCTGAGCGGTCCCCTGGCCAACGCCGTCGCCGTGCCGCTGATGGACATGGCGGTCGTGCCG
CTGGCGCTGGTGGGGACGCTGCTATCCCTGCTGTGGTCGCCGCTGGGCGATCCCGCGCTCCTGCTGGCCGGTGGCTTGCT
GCAGGGACTGCTCTGGCTATTGAGCGGATTGGCGCACCTTGCCGCGGCCTGGCAGCCTGTACTCGCGCCGGCCTGGGCGC
TGTGGCTGGCGGGACTCGGGGCGTTGCTGGCCCTGCTGCCGGCGGGTGTGCCGCTGCGCGGCTTCGGCGCACTGCTGATG
TTGCCCGGGCTGTTTCCTCTGGCGCCCGTACCAGCGGAGGGGCTGGCGCGGATCACCTTGCTGGACGTCGGTCAGGGCCT
GGCCGTGCTGGTACGTACCCGGCAGCATGCGCTGCTCTACGATGCCGGCCCGCGCCAGGGCAGCTATGACAGCGGCGCTC
GGGTCGTCCTGCCCAACGTGAAGGCTGCTGGCATCGGGGCCCTGGATATCATGTTGCTCAGCCATGCCGATGCCGATCAC
GCTGGCGGTGCGCCGGCCGTGGCCCGGGGCCTGCCAGCAGGTCGAGTGCTCAGCGGTGAGGCAGGTAGGCTAAAACCGGA
ATTGCATGCCCAGGACTGCGCAGACGGTGCCCATTGGCAATGGAACGAGGTCGCCTTCACCACCTGGTGGCATCCTGATG
CGGATTCCAACGCCTCCTCCTGTGTACTCAGCGTCGAGGCCAGGGGCGAGCGCCTGCTGTTGACCGGCGACATCGATGCC
CGCCGCGAAGGCCAGCTGGTGGCCAGTGGCGTGCCTTTGGCGGCGGATTGGCTCGTCGCCCCGCACCATGGCAGTCGCAG
CGGTTCCAGCGCCGCCTTCATCGACGCCGTCCAGCCGCGCGGTGTGCTGATCTCCCGCGGGCTGAACAATCGCTATGGCC
ATCCGCATCCGCAGGTGATGCAGCGCTATCGCGAACGTGGCGTGATTCCCTATGACACGGCCGAGCTGGGTGCCCTGAGC
TGGACACTGGGGCGCTGGGAGGCGCCGCACGGTCAGCGCCTGGAGCGTCACTGGTGGCGGATCCCCTCGCCGACACCCTA
A

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-681)

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Competence protein (Competence) (201-465)

3D structure

• AlphaFold DB: A0A0U4P5T2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	54.508	96.649	0.527